med-bio 3.5.1 (amd64 binary) in ubuntu groovy
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
Details
- Package version:
- 3.5.1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of debian-med 3.5.1 in ubuntu focal PROPOSED produced
these files:
- med-bio_3.5.1_all.deb (7.6 KiB)
Package relationships
- Depends on:
- Suggests:
- acacia
- adun.app
- amos-assembler
- amoscmp
- annovar
- apollo
- arachne
- arb
- asap
- autodocktools
- avogadro
- axparafit
- axpcoords
- bagpipe
- bambus
- bax2bam
- biceps
- big-blast
- bigsdb
- biobambam2
- bismark
- blat
- blimps-utils
- blobology
- braker
- btk-core
- cactus
- caftools
- cain
- card-rgi
- ccs
- cdna-db
- cellprofiler
- cinema
- cluster3
- cmap
- compclust
- condetri
- contrafold
- contralign
- coot
- copycat
- crossbow
- crux-toolkit
- cufflinks
- cytoscape
- dascrubber
- dazzle
- deepbinner
- dendroscope
- discosnp
- e-hive
- ecell
- embassy-phylip
- emboss-explorer
- emperor
- ensembl
- estferret
- euler-sr
- euler2
- exabayes
- exalt
- excavator
- falcon
- fasta3
- ffp
- figaro
- filtlong
- forester
- forge
- galaxy
- gassst
- gatk
- gbrowse
- gbrowse-syn
- genemark
- genesplicer
- genetrack
- genezilla
- genographer
- getdata
- giira
- glimmerhmm
- gmap
- gmv
- gramalign
- haploview
- hawkeye
- htqc
- idefix
- igdiscover
- igv
- inspect
- jalview
- jbrowse
- jigsaw
- kaptive
- kempbasu
- kineticstools
- kleborate
- lofreq
- mach-haplotyper
- mage2tab
- maker2
- malt
- manta
- martj
- maude
- maxd
- meme
- mesquite
- metabit
- metarep
- metastudent-data
- metastudent-data-2
- metastudent-data-3
- mgltools-cadd
- mgltools-vision
- migrate
- mindthegap
- minimus
- mirbase
- mirtop
- modeller
- molekel
- mosaik-aligner
- mosdepth
- mpsqed
- mrs
- msatfinder
- msxpertsuite
- mugsy
- multiqc
- mummergpu
- mview
- nanocall
- ncbi-igblast
- nextsv
- ngila
- ngsqctoolkit
- norsnet
- nw-align
- oases
- obo-edit
- oligoarrayaux
- omegamap
- oncofuse
- operondb
- optitype
- paipline
- partigene
- partitionfinder
- patristic
- pbalign
- pbbarcode
- pbgenomicconsensus
- pbh5tools
- pbhoney
- pbjelly
- pbsuite
- pcma
- pdb2pqr
- pfaat
- phagefinder
- phpphylotree
- phylographer
- phylophlan
- phyloviz-core
- phylowin
- pigx-rnaseq
- pigx-scrnaseq
- pipasic
- pizzly
- plato
- predictprotein
- profbval
- profisis
- profit
- profnet-bval
- profnet-chop
- profnet-con
- profnet-isis
- profnet-md
- profnet-norsnet
- profnet-prof
- profnet-snapfun
- profphd
- profphd-net
- prokka
- prot4est
- psipred
- pssh2
- pufferfish
- purple
- pyrophosphate-tools
- python3-alignlib
- python3-cogent
- python3-deeptools
- python3-deeptoolsintervals
- python3-loompy
- python3-orange
- python3-py2bit
- python3-pyflow
- python3-reaper
- qtlcart
- qualimap
- quast
- r-bioc-annotationhub
- r-bioc-aroma.light
- r-bioc-ensembldb
- r-bioc-geoquery
- r-bioc-go.db
- r-bioc-metagenomeseq
- r-bioc-mofa
- r-bioc-qusage
- r-bioc-savr
- r-bioc-tximport
- r-cran-boolnet
- r-cran-corrplot
- r-cran-drinsight
- r-cran-dynamictreecut
- r-cran-fitdistrplus
- r-cran-forecast
- r-cran-gprofiler
- r-cran-pheatmap
- r-cran-qqman
- r-cran-rentrez
- r-cran-sctransform
- r-cran-seurat
- r-cran-tsne
- r-cran-wgcna
- r-other-apmswapp
- raccoon
- ragout
- raxml-ng
- rbs-finder
- repeatmasker
- resfinder
- rmblast
- roadtrips
- roche454ace2caf
- rose
- rsat
- sailfish
- sambamba
- sap
- science-workflow
- seq-gen
- seq-seq-pan
- seqcluster
- sequenceconverter.app
- sibelia
- sift
- sina
- sistr
- situs
- skewer
- smalr
- smrtanalysis
- snpeff
- solvate
- sourmash
- spaln
- sparta
- splitstree
- ssaha
- strap
- strap-base
- strelka
- stringtie
- tab2mage
- tacg
- taverna
- taxinspector
- tetra
- tide
- tigr-glimmer-mg
- tn-seqexplorer
- tnseq-transit
- treebuilder3d
- treetime
- trim-galore
- tripal
- trnascan-se
- twain
- ugene
- umap
- unanimity
- unc-fish
- uniprime
- varmatch
- varscan
- vcfanno
- vdjtools
- vg
- vienna-rna
- vmd
- x-tandem-pipeline
- zodiac-zeden
- Recommends:
- abacas
- abyss
- acedb-other
- adapterremoval
- adun-core
- aegean
- aevol
- alien-hunter
- alter-sequence-alignment
- altree
- amap-align
- ampliconnoise
- andi
- anfo
- aragorn
- arden
- ariba
- art-nextgen-simulation-tools
- artemis
- artfastqgenerator
- assemblytics
- atac
- atropos
- augustus
- autodock
- autodock-vina
- autogrid
- axe-demultiplexer
- baitfisher
- bali-phy
- ballview
- bamtools
- bandage
- barrnap
- bcbio
- bcftools
- beads
- beagle
- beast-mcmc
- beast2-mcmc
- bedops
- bedtools
- belvu
- berkeley-express
- bio-eagle
- bio-rainbow
- bio-tradis
- biosyntax
- bitseq
- blasr
- blixem
- bolt-lmm
- bowtie
- bowtie2
- boxshade
- bppphyview
- bppsuite
- brig
- bwa
- canu
- cassiopee
- cct
- cd-hit
- cdbfasta
- centrifuge
- cgview
- changeo
- chimeraslayer
- chromhmm
- chromimpute
- circlator
- circos
- clearcut
- clonalframe
- clonalframeml
- clonalorigin
- clustalo
- clustalw
- clustalx
- cnvkit
- codonw
- concavity
- conservation-code
- crac
- csb
- cutadapt
- daligner
- datamash
- dawg
- dazzdb
- deepnano
- delly
- dialign
- dialign-tx
- diamond-aligner
- dindel
- disulfinder
- dnaclust
- dotter
- dssp
- dwgsim
- e-mem
- ea-utils
- ecopcr
- edtsurf
- eigensoft
- elph
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- emmax
- estscan
- examl
- exonerate
- fastahack
- fastaq
- fastdnaml
- fastlink
- fastml
- fastp
- fastqc
- fastqtl
- fasttree
- ffindex
- figtree
- fitgcp
- flexbar
- fml-asm
- freebayes
- freecontact
- fsa
- fsm-lite
- gamgi
- garli
- garlic
- gasic
- gatb-core
- gdpc
- gemma
- genometester
- genometools
- gentle
- gff2aplot
- gff2ps
- gffread
- ghemical
- ghmm
- glam2
- grabix
- graphlan
- grinder
- gromacs
- gubbins
- gwama
- harvest-tools
- hhsuite
- hilive
- hinge
- hisat2
- hmmer
- hmmer2
- hyphy-mpi
- idba
- igor
- indelible
- infernal
- ipig
- iqtree
- iva
- jaligner
- jellyfish
- jellyfish1
- jmodeltest
- jmol
- kalign
- kallisto
- khmer
- king-probe
- kissplice
- kma
- kmc
- kmer
- kmerresistance
- kraken
- kraken2
- lagan
- lamarc
- lambda-align
- lambda-align2
- last-align
- leaff
- lefse
- librg-utils-perl
- libvcflib-tools
- logol
- loki
- ltrsift
- lucy
- macs
- macsyfinder
- maffilter
- mafft
- mapdamage
- mapsembler2
- maq
- maqview
- mash
- mauve-aligner
- melting
- meryl
- metaphlan2
- metastudent
- mhap
- microbegps
- microbiomeutil
- minia
- miniasm
- minimac4
- minimap
- minimap2
- mipe
- mira-assembler
- mlv-smile
- mmseqs2
- mothur
- mptp
- mrbayes
- mummer
- murasaki
- muscle
- mustang
- nanook
- nanopolish
- nast-ier
- ncbi-blast+
- ncbi-blast+-legacy
- ncbi-entrez-direct
- ncbi-epcr
- ncbi-seg
- ncbi-tools-bin
- ncbi-tools-x11
- ncl-tools
- ncoils
- neobio
- njplot
- norsp
- obitools
- openms
- optimir
- pal2nal
- paleomix
- paml
- paraclu
- parsinsert
- parsnp
- patman
- pbdagcon
- pbsim
- perlprimer
- perm
- pftools
- phast
- phipack
- phybin
- phylip
- phyml
- physamp
- phyutility
- phyx
- picard-tools
- piler
- pilercr
- pilon
- pirs
- placnet
- plasmidomics
- plasmidseeker
- plast
- plink
- plink1.9
- plip
- poa
- populations
- porechop
- poretools
- prank
- predictnls
- prime-phylo
- primer3
- proalign
- probabel
- probalign
- probcons
- proda
- prodigal
- profphd-utils
- proftmb
- progressivemauve
- proteinortho
- prottest
- pscan-chip
- pscan-tfbs
- psortb
- pycorrfit
- pymol
- pynast
- pyscanfcs
- python3-biomaj3-daemon
- python3-geneimpacts
- python3-gffutils
- python3-presto
- python3-pybedtools
- python3-pybel
- python3-sqt
- python3-treetime
- pyvcf
- qcumber
- qiime
- qtltools
- quorum
- qutemol
- r-bioc-annotate
- r-bioc-biostrings
- r-bioc-bitseq
- r-bioc-cner
- r-bioc-cummerbund
- r-bioc-deseq2
- r-bioc-dnacopy
- r-bioc-ebseq
- r-bioc-genefilter
- r-bioc-geneplotter
- r-bioc-gviz
- r-bioc-hilbertvis
- r-bioc-impute
- r-bioc-limma
- r-bioc-mergeomics
- r-bioc-multiassayexperiment
- r-bioc-pcamethods
- r-bioc-phyloseq
- r-bioc-rtracklayer
- r-bioc-tfbstools
- r-cran-adegenet
- r-cran-adephylo
- r-cran-alakazam
- r-cran-ape
- r-cran-bio3d
- r-cran-distory
- r-cran-genabel
- r-cran-kaos
- r-cran-metamix
- r-cran-phangorn
- r-cran-phytools
- r-cran-pscbs
- r-cran-qtl
- r-cran-rotl
- r-cran-samr
- r-cran-sdmtools
- r-cran-seqinr
- r-cran-shazam
- r-cran-tcr
- r-cran-tigger
- r-cran-treescape
- r-cran-vegan
- r-cran-webgestaltr
- r-other-hms-dbmi-spp
- r-other-mott-happy.hbrem
- racon
- radiant
- rambo-k
- rampler
- rapmap
- rasmol
- raster3d
- rate4site
- raxml
- ray
- rdp-alignment
- rdp-classifier
- rdp-readseq
- readseq
- reapr
- relion-bin
- relion-bin+gui
- repeatmasker-recon
- reprof
- rna-star
- rnahybrid
- roary
- roguenarok
- rsem
- rtax
- runcircos-gui
- saint
- salmon
- samblaster
- samtools
- scoary
- scrm
- scythe
- seaview
- seer
- segemehl
- seqan-apps
- seqmagick
- seqprep
- seqsero
- seqtk
- sga
- sibsim4
- sickle
- sigma-align
- sim4
- sim4db
- skesa
- smalt
- smithwaterman
- snap
- snap-aligner
- sniffles
- snp-sites
- snpomatic
- soapaligner
- soapdenovo
- soapdenovo2
- soapsnp
- sortmerna
- spaced
- spades
- spoa
- sprai
- spread-phy
- squizz
- sra-toolkit
- srst2
- ssake
- sspace
- ssw-align
- stacks
- staden
- staden-io-lib-utils
- subread
- suitename
- sumaclust
- sumatra
- sumtrees
- surankco
- swarm
- sweed
- t-coffee
- tabix
- tantan
- theseus
- tigr-glimmer
- tm-align
- toil
- topp
- toppred
- trace2dbest
- tracetuner
- transdecoder
- transrate-tools
- transtermhp
- tree-puzzle
- treeview
- treeviewx
- trimmomatic
- trinityrnaseq
- tvc
- uc-echo
- umis
- unicycler
- varna
- vcftools
- velvet
- velvetoptimiser
- viewmol
- virulencefinder
- vsearch
- wham-align
- wigeon
- wise
- yaha
- zalign
