ragout binary package in Ubuntu Focal amd64
Ragout (Reference-Assisted Genome Ordering UTility) is a tool for
chromosome-level scaffolding using multiple references. Given initial
assembly fragments (contigs/scaffolds) and one or multiple related
references (complete or draft), it produces a chromosome-scale assembly
(as a set of scaffolds).
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The approach is based on the analysis of genome rearrangements (like
inversions or chromosomal translocations) between the input genomes and
reconstructing the most parsimonious structure of the target genome.
.
Ragout now supports both small and large genomes (of mammalian scale
and complexity). The assembly of highly polymorphic genomes is
currently limited.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-03-23 01:53:20 UTC | Published | Ubuntu Focal amd64 | release | universe | science | Optional | 2.2+ds-1build2 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.2+ds-1build2 | |||
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2020-03-23 01:54:02 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.2+ds-1build1 | ||
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2020-03-24 06:10:11 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.2+ds-1build1 | ||
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2020-01-25 09:28:24 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.2+ds-1 | ||
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2020-01-26 12:10:09 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.2+ds-1 | ||
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2020-01-04 23:23:59 UTC | Superseded | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.1.1+dfsg-1build1 | ||
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2019-12-17 13:47:25 UTC | Superseded | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.1.1+dfsg-1 | ||
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