iqtree binary package in Ubuntu Focal amd64
IQ-TREE is a very efficient maximum likelihood phylogenetic software
with following key features among others:
.
* A novel fast and effective stochastic algorithm to estimate maximum
likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
of likelihood while requiring similar amount of computing time (see
Nguyen et al., 2015)
* An ultrafast bootstrap approximation to assess branch supports (see
Minh et al., 2013).
* A wide range of substitution models for binary, DNA, protein, codon,
and morphological alignments.
* Ultrafast model selection for all data types, 10 to 100 times faster
than jModelTest and ProtTest.
* Finding best partition scheme like PartitionFinder.
* Partitioned models with mixed data types for phylogenomic (multi-
gene) alignments, allowing for separate, proportional, or joint
branch lengths among genes.
* Supporting the phylogenetic likelihod library (PLL) (see Flouri et
al., 2014)
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-03-23 10:08:18 UTC | Published | Ubuntu Focal amd64 | release | universe | science | Optional | 1.6.12+dfsg-1build1 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 1.6.12+dfsg-1build1 | |||
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2020-03-23 10:09:32 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 1.6.12+dfsg-1 | ||
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2020-03-24 12:10:14 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 1.6.12+dfsg-1 | ||
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2019-12-04 22:28:19 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 1.6.11+dfsg-1 | ||
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