Binary package “python-pyvcf-examples” in ubuntu xenial
Example data for Variant Call Format (VCF) parser for Python
The Variant Call Format (VCF) specifies the format of a text file used
in bioinformatics for storing gene sequence variations. The format has
been developed with the advent of large-scale genotyping and DNA
sequencing projects, such as the 1000 Genomes Project.
.
The intent of this module is to mimic the ``csv`` module in the Python
stdlib, as opposed to more flexible serialization formats like JSON or
YAML. ``vcf`` will attempt to parse the content of each record based on
the data types specified in the meta-information lines -- specifically
the ##INFO and
##FORMAT lines. If these lines are missing or incomplete, it will check
against the reserved types mentioned in the spec. Failing that, it will
just return strings.
.
This package provides example data to test the Python modules.
Source package
Published versions
- python-pyvcf-examples 0.6.7-2build1 in amd64 (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in amd64 (Release)
- python-pyvcf-examples 0.6.7-2build1 in arm64 (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in arm64 (Release)
- python-pyvcf-examples 0.6.7-2build1 in armhf (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in armhf (Release)
- python-pyvcf-examples 0.6.7-2build1 in i386 (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in i386 (Release)
- python-pyvcf-examples 0.6.7-2build1 in powerpc (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in powerpc (Release)
- python-pyvcf-examples 0.6.7-2build1 in ppc64el (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in ppc64el (Release)
- python-pyvcf-examples 0.6.7-2build1 in s390x (Proposed)
- python-pyvcf-examples 0.6.7-2build1 in s390x (Release)