libtfbs-perl 0.7.1+ds-4 (s390x binary) in ubuntu oracular
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://
Details
- Package version:
- 0.7.1+ds-4
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- libtfbs-perl_0.7.1+ds-4_s390x.deb (224.0 KiB)
Package relationships
- Depends on:
- bioperl
- libc6 (>= 2.38)
- libdbi-perl
- libwww-perl
- pdl (>= 1:2.089-1)
- pdlapi-20
- perl (>= 5.38.2-5)
- perlapi-5.38.2
- Recommends: