libtfbs-perl 0.7.1+ds-4 source package in Ubuntu
Changelog
libtfbs-perl (0.7.1+ds-4) unstable; urgency=medium
* Team upload.
* d/control: declare compliance to standards version 4.7.0.
* Rename gcc-14.patch to dpkg-1.22.6.patch.
The issue addressed by gcc-14.patch originally resulted from a change
in dpkg 1.22.6 in options passed to gcc.
* gcc-14.patch: new: fix build failure with gcc 14.
Build failures were caused by functions implicitly declared as
returning an integer type. (Closes: #1075213)
-- Étienne Mollier <email address hidden> Wed, 10 Jul 2024 17:29:17 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- perl
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | perl |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libtfbs-perl_0.7.1+ds-4.dsc | 2.3 KiB | 806ef00d9c5b62f944795219123e65609994417577c917fe80786263a5ac26bc |
| libtfbs-perl_0.7.1+ds.orig.tar.xz | 191.8 KiB | 4720e694e55b9df9c9732f4e93102882005666019c49652000d1230244929e73 |
| libtfbs-perl_0.7.1+ds-4.debian.tar.xz | 12.0 KiB | 8775b5df5b86683a3e832e2f7cfa17542fdbed7017a828b154cd30551885ee71 |
Available diffs
- diff from 0.7.1+ds-3 to 0.7.1+ds-4 (7.5 KiB)
No changes file available.
Binary packages built by this source
- libtfbs-perl: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor. org/packages/ TFBSTools/>
- libtfbs-perl-dbgsym: debug symbols for libtfbs-perl
