trinityrnaseq 2.15.1+dfsg-5build1 (arm64 binary) in ubuntu oracular
Trinity represents a novel method for the efficient and robust de novo
reconstruction of transcriptomes from RNA-seq data. Trinity combines three
independent software modules: Inchworm, Chrysalis, and Butterfly, applied
sequentially to process large volumes of RNA-seq reads. Trinity partitions
the sequence data into many individual de Bruijn graphs, each representing the
transcriptional complexity at a given gene or locus, and then processes
each graph independently to extract full-length splicing isoforms and to tease
apart transcripts derived from paralogous genes.
Details
- Package version:
- 2.15.1+dfsg-5build1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
arm64 build of trinityrnaseq 2.15.1+dfsg-5build1 in ubuntu noble PROPOSED produced
these files:
Package relationships
- Depends on:
- berkeley-express
- bowtie
- bowtie2
- default-jre-headless
- jaligner
- jellyfish
- kallisto
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.0)
- libgetopt-java
- libgomp1 (>= 6)
- libhts3t64 (>= 1.17)
- libjung-free-java
- libstdc++6 (>= 13.1)
- liburi-perl
- libwww-perl
- ncbi-blast+
- parafly
- perl
- python3
- python3-htseq
- r-base-core
- rsem
- samtools
- subread
- trimmomatic
- zlib1g (>= 1:1.1.4)
- Recommends:
- curl
- gmap
- hisat2
- picard-tools
- python3-hisat2
- python3-numpy
- r-bioc-biobase
- r-bioc-ctc
- r-bioc-deseq2
- r-bioc-dexseq
- r-bioc-edger
- r-bioc-goseq
- r-bioc-qvalue
- r-bioc-rots
- r-cran-ape
- r-cran-argparse
- r-cran-cluster
- r-cran-fastcluster
- r-cran-goplot
- r-cran-gplots
- r-cran-kernsmooth
- r-cran-readr
- r-cran-tidyverse
- rna-star
- salmon
- tabix
- trinityrnaseq-examples