r-bioc-dnacopy binary package in Ubuntu Mantic amd64
Implements the circular binary segmentation (CBS) algorithm to segment DNA
copy number data and identify genomic regions with abnormal copy number.
.
This package is for analyzing array DNA copy number data, which is usually
(but not always) called array Comparative Genomic Hybridization (array CGH)
data It implements a methodology for finding change-points in these data which
are points after which the (log) test over reference ratios have changed
location. This model is that the change-points correspond to positions where
the underlying DNA copy number has changed. Therefore, change-points can be
used to identify regions of gained and lost copy number. Also provided is a
function for making relevant plots of these data.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
---|---|---|---|---|---|---|---|---|---|
2023-08-15 13:47:51 UTC | Published | Ubuntu Mantic amd64 | release | universe | gnu-r | Optional | 1.74.1-1 | ||
|
|||||||||
Deleted | Ubuntu Mantic amd64 | proposed | universe | gnu-r | Optional | 1.74.1-1 | |||
|
|||||||||
2023-08-15 13:48:46 UTC | Superseded | Ubuntu Mantic amd64 | release | universe | gnu-r | Optional | 1.72.3-1 | ||
|