libjellyfish-2.0-2 binary package in Ubuntu Mantic amd64
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains the dynamic library the main executable of
jellyfish is linked to.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2023-08-07 13:59:06 UTC | Published | Ubuntu Mantic amd64 | release | universe | libs | Optional | 2.3.0-16 | ||
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Deleted | Ubuntu Mantic amd64 | proposed | universe | libs | Optional | 2.3.0-16 | |||
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2023-08-07 13:59:11 UTC | Superseded | Ubuntu Mantic amd64 | release | universe | libs | Optional | 2.3.0-15build1 | ||
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