libjellyfish-2.0-2 2.3.0-15build1 (amd64 binary) in ubuntu mantic
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains the dynamic library the main executable of
jellyfish is linked to.
Details
- Package version:
- 2.3.0-15build1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
- libjellyfish-2.0-2_2.3.0-15build1_amd64.deb (63.1 KiB)
Package relationships
- Depends on: