r-cran-alakazam 1.2.1-1 (amd64 binary) in ubuntu lunar
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
Details
- Package version:
- 1.2.1-1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
- r-cran-alakazam_1.2.1-1_amd64.deb (2.3 MiB)
Package relationships
- Depends on:
- libc6 (>= 2.14)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 5.2)
- r-api-4.0
- r-base-core (>= 4.2.2-1)
- r-bioc-biostrings (>= 2.56.0)
- r-bioc-genomicalignments (>= 1.24.0)
- r-bioc-iranges (>= 2.22.2)
- r-cran-airr (>= 1.3)
- r-cran-ape
- r-cran-dplyr (>= 1.0)
- r-cran-ggplot2 (>= 3.3.4)
- r-cran-igraph (>= 1.0)
- r-cran-matrix (>= 1.3-0)
- r-cran-progress
- r-cran-rcpp (>= 0.12.12)
- r-cran-readr
- r-cran-rlang
- r-cran-scales
- r-cran-seqinr
- r-cran-stringi
- r-cran-tibble
- r-cran-tidyr (>= 1.0)
- Suggests: