That bundled htslib seems to make the situation a bit messy,
since bedtools does not clearly list the htslib version that was bundled or I can't find it (oh, maybe it's 1.9) and the commit does not apply cleanly.
So my guess is that this should be fixed in bedtools upstream first... but even that is not perfect, since it would fix the latest upstream version only.
Well, this needs some further discussions ...
That bundled htslib seems to make the situation a bit messy,
since bedtools does not clearly list the htslib version that was bundled or I can't find it (oh, maybe it's 1.9) and the commit does not apply cleanly.
So my guess is that this should be fixed in bedtools upstream first... but even that is not perfect, since it would fix the latest upstream version only.
Well, this needs some further discussions ...