vcfanno 0.3.5+ds-1ubuntu0.1 source package in Ubuntu
Changelog
vcfanno (0.3.5+ds-1ubuntu0.1) mantic-security; urgency=medium * No change rebuild due to golang-1.20, golang-1.21 updates -- Nishit Majithia <email address hidden> Thu, 01 Feb 2024 14:11:00 +0530
Upload details
- Uploaded by:
- Nishit Majithia
- Uploaded to:
- Mantic
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Mantic | updates | universe | misc | |
Mantic | security | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
vcfanno_0.3.5+ds.orig.tar.xz | 489.9 KiB | eedbe0f9a04a9422d1b4e34a2fd625a1d07d009058999883fa4df1b725f2c8ff |
vcfanno_0.3.5+ds-1ubuntu0.1.debian.tar.xz | 2.2 MiB | 41d962762f045b3d23700c71273740f3ad83f97dce4ca7a8e82c41efea09bcb9 |
vcfanno_0.3.5+ds-1ubuntu0.1.dsc | 2.4 KiB | ab1aed2abaf2bc6ecc109c1debbb370c8d636d8b960cd7a1732c5f8a7d1f8537 |
Available diffs
Binary packages built by this source
- vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
Vcfanno is written in go and it supports custom user-scripts written in
Lua. It can annotate more than 8000 variants per second with 34
annotations from 9 files on a modest laptop and over 30K variants per
second using 12 processes on a server.
- vcfanno-dbgsym: debug symbols for vcfanno
- vcfanno-examples: examples for vcfanno: annotate a VCF with other VCFs/BEDs/tabixed files
Vcfanno allows you to quickly annotate your VCF with any number of INFO
fields from any number of VCFs or BED files. It uses a simple conf file
to allow the user to specify the source annotation files and fields and
how they will be added to the info of the query VCF.
.
* For VCF, values are pulled by name from the INFO field with special
cases of ID and FILTER to pull from those VCF columns.
* For BED, values are pulled from (1-based) column number.
* For BAM, depth (count), "mapq" and "seq" are currently supported.
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.