I don't know why you want us to open a new bug report.
This one describes the issue. And this is still a problem in 16.04.1 LTS fully updated.
Also it happens with global menu and LIM (locally integrated menus). The program can be covered by both panel and launcher or only by launcher.
Today with menus set to global part of terminal ended up under launcher. Most of its menus displayed in the window.
When I'm using LIM then Terminal is covered by both panel and launcher.
I don't know why you want us to open a new bug report.
This one describes the issue. And this is still a problem in 16.04.1 LTS fully updated.
Also it happens with global menu and LIM (locally integrated menus). The program can be covered by both panel and launcher or only by launcher.
Today with menus set to global part of terminal ended up under launcher. Most of its menus displayed in the window.
When I'm using LIM then Terminal is covered by both panel and launcher.