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python-pairix package

python-pairix 0.3.7-5 source package in Ubuntu

Changelog

python-pairix (0.3.7-5) unstable; urgency=medium

  * Team Upload.
  * d/rules: sort with names while tar-ing so 
    as to make build reproducible (Closes: #995258)

 -- Nilesh Patra <email address hidden>  Sat, 04 Dec 2021 23:48:55 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
python-pairix_0.3.7-5.dsc 2.2 KiB 66534df143a93b9ca70f4a817c5f2bb72d5d83988fbad2fe581444f0758d9356
python-pairix_0.3.7.orig.tar.gz 167.3 MiB c0de5fb5baea2bf90a6179f9c81c911e2fb951b716b38574f73ac5b23ac84969
python-pairix_0.3.7-5.debian.tar.xz 4.6 KiB 8f11fc3acaaa539f49c25f51a033bb89293143743125a09bc31a020dd5b19c80

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Binary packages built by this source

python-pairix-examples: 1D/2D indexing and querying with a pair of genomic coordinates (examples)

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.
 .
 This package contains some example data to test the package.

python3-pairix: 1D/2D indexing and querying with a pair of genomic coordinates

 Pairix is a tool for indexing and querying on a block-compressed text
 file containing pairs of genomic coordinates.
 .
 Pairix is a stand-alone C program that was written on top of tabix as a
 tool for the 4DN-standard pairs file format describing Hi-C data:
 pairs_format_specification.md
 .
 However, Pairix can be used as a generic tool for indexing and querying
 any bgzipped text file containing genomic coordinates, for either 2D- or
 1D- indexing and querying.
 .
 For example: given the custom text file below, you want to extract
 specific lines from the Pairs file further below. An awk command would
 read the Pairs file from beginning to end. Pairix creates an index and
 uses it to access the file from a relevant position by taking advantage
 of bgzf compression, allowing for a fast query on large files.

python3-pairix-dbgsym: debug symbols for python3-pairix