Binary package “python-pairix-examples” in ubuntu jammy
1D/2D indexing and querying with a pair of genomic coordinates (examples)
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
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Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_
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However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
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For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
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This package contains some example data to test the package.
Source package
Published versions
- python-pairix-examples 0.3.7-5build1 in amd64 (Proposed)
- python-pairix-examples 0.3.7-5build1 in amd64 (Release)
- python-pairix-examples 0.3.7-5build1 in arm64 (Proposed)
- python-pairix-examples 0.3.7-5build1 in arm64 (Release)
- python-pairix-examples 0.3.7-5build1 in armhf (Proposed)
- python-pairix-examples 0.3.7-5build1 in armhf (Release)
- python-pairix-examples 0.3.7-5build1 in i386 (Proposed)
- python-pairix-examples 0.3.7-5build1 in i386 (Release)
- python-pairix-examples 0.3.7-5build1 in ppc64el (Proposed)
- python-pairix-examples 0.3.7-5build1 in ppc64el (Release)
- python-pairix-examples 0.3.7-5build1 in riscv64 (Proposed)
- python-pairix-examples 0.3.7-5build1 in riscv64 (Release)
- python-pairix-examples 0.3.7-5build1 in s390x (Proposed)
- python-pairix-examples 0.3.7-5build1 in s390x (Release)