The same symptom (nautilus menu-bar visible behind top panel) is present with Unity when compizconfig settings manager is used to set the Unity Plugin panel Opacity to transparent.
In my case this is with indicator-appmenu removed to disable the global(paininthebutt)menu.
The same symptom (nautilus menu-bar visible behind top panel) is present with Unity when compizconfig settings manager is used to set the Unity Plugin panel Opacity to transparent.
In my case this is with indicator-appmenu removed to disable the global( paininthebutt) menu.