libtfbs-perl 0.7.1+ds-3 source package in Ubuntu
Changelog
libtfbs-perl (0.7.1+ds-3) unstable; urgency=medium
* Team upload.
* Bump debhelper compat to 13.
* Use dh-sequence-pdl for dh_pdl.
* Update lintian overrides.
* Bump Standards-Version to 4.6.2, no changes.
* Add Rules-Requires-Root to control file.
* Add patch to fix FTBFS with GCC 14.
(closes: #1066716)
-- Bas Couwenberg <email address hidden> Wed, 13 Mar 2024 18:33:49 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- perl
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | perl | |
| Noble | release | universe | perl |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libtfbs-perl_0.7.1+ds-3.dsc | 2.2 KiB | 60b9e1fb483bc7f2d54c15edb0358e88a3dbc0dbc2f4d4a80ddc28cdbf6a8faf |
| libtfbs-perl_0.7.1+ds.orig.tar.xz | 191.8 KiB | 4720e694e55b9df9c9732f4e93102882005666019c49652000d1230244929e73 |
| libtfbs-perl_0.7.1+ds-3.debian.tar.xz | 11.6 KiB | d33a5299b220c175387263d41d45b52c29832e47ad0760c0137bae72d4ff21b2 |
Available diffs
No changes file available.
Binary packages built by this source
- libtfbs-perl: scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the
Transfac and Jaspar databases that describe a special family of proteins,
the transcription factors. These bind to genomic DNA to initiate (or
prevent) the readout of a gene. Once multiple binding sites are known
for a transcription factor, these are gathered in a single file and are
aligned in order to find position-specific characteristica that might
be used to predict such binding events in novel DNA sequences.
.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002)
TFBS: Computational framework for transcription factor binding site analysis.
Bioinformatics 18:1135-1136".
.
Note: the TFBS perl module is no longer under active development. All the
functionality can be found in the TFBSTools Bioconductor package; users are
highly encouraged to switch. <http://bioconductor. org/packages/ TFBSTools/>
- libtfbs-perl-dbgsym: debug symbols for libtfbs-perl
