This is fixed in recent versions of AllTray, provided that the icons provided for the application have a transparent layer to them so that the panel color appears as intended behind the icon. However, AllTray's latest releases will not be available for Ubuntu until 0.8.0 is released (unless someone packages a dev release, such as 0.7.4dev). It is my hope to have 0.8.0 out for Karmic + 1, but this really depends on me figuring out how to implement close-to-tray, as this really seems to be the most popular feature of the software.
This is fixed in recent versions of AllTray, provided that the icons provided for the application have a transparent layer to them so that the panel color appears as intended behind the icon. However, AllTray's latest releases will not be available for Ubuntu until 0.8.0 is released (unless someone packages a dev release, such as 0.7.4dev). It is my hope to have 0.8.0 out for Karmic + 1, but this really depends on me figuring out how to implement close-to-tray, as this really seems to be the most popular feature of the software.