I just recreated this issue using Lucid 10.04 Alpha 2.
I did not even need to use ntfsclone to break the partition... merely added the Windows partitions to my fstab in read/write mode, reboot into Linux, reboot again into Windows and Windows 2000 will no longer boot.
Seems to me that read/write NTFS support and Windows 2000 do NOT play nice together.
I just recreated this issue using Lucid 10.04 Alpha 2.
I did not even need to use ntfsclone to break the partition... merely added the Windows partitions to my fstab in read/write mode, reboot into Linux, reboot again into Windows and Windows 2000 will no longer boot.
Seems to me that read/write NTFS support and Windows 2000 do NOT play nice together.
How may I assist further?