Comment 28 for bug 217270

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Mackenzie Morgan (maco.m) wrote : Re: [Bug 217270] Re: seahorse does not recognize seahorse-agent/ssh-agent as a caching agent

I *think* if you change the numbers in /etc/X11/Xsession.d/ that'll do it.
The lower numbers start first, higher numbers start last. Seahorse-plugins is
by default a lower number, so it should be starting first. If you have "use-
agent" in your gpg.conf this *may* vary.

The hacky way:
In your GNOME session autostart, have it kill gpg-agent and ssh-agent, then
start the ones you want.