It happens with multiple .xls files, and still happens if I save to .gnumeric, quit, open file.gnumeric, change one cell, click Save, then click the x to close the window. So it doesn't seem related to format.
In fact, you don't even need a file. Run gnumeric with no arguments. Enter a in cell a1, then click Save. The Save as dialog comes up; choose a filename, leave the format as .gnumeric and let it save to filename.gnumeric. Then click the windowmanager x. The confirmation dialog comes up.
It happens with multiple .xls files, and still happens if I save to .gnumeric, quit, open file.gnumeric, change one cell, click Save, then click the x to close the window. So it doesn't seem related to format.
In fact, you don't even need a file. Run gnumeric with no arguments. Enter a in cell a1, then click Save. The Save as dialog comes up; choose a filename, leave the format as .gnumeric and let it save to filename.gnumeric. Then click the windowmanager x. The confirmation dialog comes up.