I tried this with 3 upgradeable packages (epiphany-browser, epiphany-browser-data, and gdebi-core) on Quantal. Of the 3 only epiphany-browser and epiphany-browser-data had 'Auto-Installed' changed from 1 to 0.
This was using aptdaemon version 0.45+bzr861-0ubuntu9.1.
I tried this with 3 upgradeable packages (epiphany-browser, epiphany- browser- data, and gdebi-core) on Quantal. Of the 3 only epiphany-browser and epiphany- browser- data had 'Auto-Installed' changed from 1 to 0.
This was using aptdaemon version 0.45+bzr861- 0ubuntu9. 1.