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bbfa235
(Get the code!)
I may have found the problem... if this does not work, then I will look into the server cache issue, although I do not think that is the problem because it is only the .js and .tpl files that I have an issue with.
So what I think is the problem now, is that WinSCP (like most FTP programs) uses an automatic mode to determine whether a file should be uploaded as ascii or binary. Both the .js and .tpl files were being uploaded as binary. I changed the settings to upload them as ascii now.
I will again report back as to whether this solves the issue or not. If it does not, then I will have to look at server side issues as mentioned above.