Brad,
It should be fixed in recent Launchpad changesets.
I will prepare new release in two days if you can't try bzr tree by some reason.
Brad Fino wrote: > Public bug reported: > > On xtrabackup 0.4 rpm for RHEL5, when running innobackupex --apply-log > --use-memory=16000, it gets to 99% and then just hangs. I left it there > for a good 12 hours and when I came back it hadn't budged ... > xtrabackup is sitting in the processlist pegged at 100% CPU. Here's an > strace starting from the last output of apply-log: > > [pid 6765] write(2, "InnoDB: Doing recovery: scanned "..., 79InnoDB: Doing recovery: scanned up to log sequence number 80 1103001814 (99 %) > ) = 79 > [pid 6765] pread(8, "( \337=\0\326\0002\0\6TM\300\366\24\0\2\0\2\200\4\200\10\21\6\2\235\16\0\201v$"..., 512, 520458240) = 512 > [pid 6765] futex(0x2082cd2c, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2082ccf0, 0 <unfinished ...> > [pid 6768] <... futex resumed> ) = 0 > [pid 6768] futex(0x2082ccf0, FUTEX_WAIT, 2, NULL <unfinished ...> > [pid 6765] <... futex resumed> ) = 1 > [pid 6765] futex(0x2082ccf0, FUTEX_WAKE, 1 <unfinished ...> > [pid 6768] <... futex resumed> ) = 0 > [pid 6768] futex(0x2082ccf0, FUTEX_WAKE, 1) = 0 > [pid 6768] pwrite(8, "\0\0\0\0\0\6S\247\0\0\0P\"\270\361>\0\0\t>\1\0\0\0\377\377\377\377\377\377\377\377"..., 512, 1536) = 512 > [pid 6768] fsync(8 <unfinished ...> > [pid 6765] <... futex resumed> ) = 1 > [pid 6765] sched_yield() = 0 > [pid 6765] futex(0x3dd0192c, FUTEX_WAIT, 1, NULL <unfinished ...> > [pid 6768] <... fsync resumed> ) = 0 > [pid 6768] futex(0x3dd0192c, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x3dd018f0, 0) = 1 > [pid 6768] futex(0x2082cd2c, FUTEX_WAIT, 3, NULL <unfinished ...> > [pid 6765] <... futex resumed> ) = 0 > [pid 6765] futex(0x3dd018f0, FUTEX_WAKE, 1) = 0 > [pid 6765] mmap(NULL, 36962304, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2aaf64373000 > [pid 6765] mmap(NULL, 36962304, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2aaf666b3000 > [pid 6765] mmap(NULL, 147841024, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2aaf689f3000 > [pid 6765] open("/tmp/ibI2XSSt", O_RDWR|O_CREAT|O_EXCL, 0600) = 9 > [pid 6765] unlink("/tmp/ibI2XSSt") = 0 > [pid 6765] dup(9) = 10 > [pid 6765] close(9) = 0 > [pid 6765] fcntl(10, F_GETFL) = 0x8002 (flags O_RDWR|O_LARGEFILE) > [pid 6765] fstat(10, {st_mode=S_IFREG|0600, st_size=0, ...}) = 0 > [pid 6765] mmap(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x2aaf716f1000 > [pid 6765] lseek(10, 0, SEEK_CUR) = 0 > [pid 6765] pread(3, "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16384, 114688) = 16384 > [pid 6765] pread(3, "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16384, 16384) = 16384 > [pid 6765] pread(3, "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16384, 49152) = 16384 > [pid 6765] pread(3, "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16384, 0) = 16384 > [pid 6765] pread(3, "\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0"..., 16384, 65536) = 16384 > > At this point it just sits there. I've taken a 2nd backup from a 2nd > DB server and have the same results. Backups were taken via tar stream > over ssh. > > ** Affects: percona-xtrabackup > Importance: Undecided > Status: New >
-- Vadim Tkachenko, CTO Percona Inc. ICQ: 369-510-335, Skype: vadimtk153, Phone +1-888-401-3403 MySQL Performance Blog - http://www.mysqlperformanceblog.com MySQL Consulting http://www.percona.com/
Attend the 2009 Percona Performance Conference April 22-23 - http://conferences.percona.com/
Brad,
It should be fixed in recent Launchpad changesets.
I will prepare new release in two days if you can't try bzr tree by some
reason.
Brad Fino wrote: 326\0002\ 0\6TM\300\ 366\24\ 0\2\0\2\ 200\4\200\ 10\21\6\ 2\235\16\ 0\201v$ "..., 512, 520458240) = 512 0\0\6S\ 247\0\0\ 0P\"\270\ 361>\0\ 0\t>\1\ 0\0\0\377\ 377\377\ 377\377\ 377\377\ 377"... , 512, 1536) = 512 PROT_WRITE, MAP_PRIVATE| MAP_ANONYMOUS, -1, 0) = 0x2aaf64373000 PROT_WRITE, MAP_PRIVATE| MAP_ANONYMOUS, -1, 0) = 0x2aaf666b3000 PROT_WRITE, MAP_PRIVATE| MAP_ANONYMOUS, -1, 0) = 0x2aaf689f3000 tmp/ibI2XSSt" , O_RDWR| O_CREAT| O_EXCL, 0600) = 9 "/tmp/ibI2XSSt" ) = 0 S_IFREG| 0600, st_size=0, ...}) = 0 PROT_WRITE, MAP_PRIVATE| MAP_ANONYMOUS, -1, 0) = 0x2aaf716f1000 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0"..., 16384, 114688) = 16384 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0"..., 16384, 16384) = 16384 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0"..., 16384, 49152) = 16384 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0"..., 16384, 0) = 16384 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0\0\0\0\ 0"..., 16384, 65536) = 16384
> Public bug reported:
>
> On xtrabackup 0.4 rpm for RHEL5, when running innobackupex --apply-log
> --use-memory=16000, it gets to 99% and then just hangs. I left it there
> for a good 12 hours and when I came back it hadn't budged ...
> xtrabackup is sitting in the processlist pegged at 100% CPU. Here's an
> strace starting from the last output of apply-log:
>
> [pid 6765] write(2, "InnoDB: Doing recovery: scanned "..., 79InnoDB: Doing recovery: scanned up to log sequence number 80 1103001814 (99 %)
> ) = 79
> [pid 6765] pread(8, "( \337=\0\
> [pid 6765] futex(0x2082cd2c, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x2082ccf0, 0 <unfinished ...>
> [pid 6768] <... futex resumed> ) = 0
> [pid 6768] futex(0x2082ccf0, FUTEX_WAIT, 2, NULL <unfinished ...>
> [pid 6765] <... futex resumed> ) = 1
> [pid 6765] futex(0x2082ccf0, FUTEX_WAKE, 1 <unfinished ...>
> [pid 6768] <... futex resumed> ) = 0
> [pid 6768] futex(0x2082ccf0, FUTEX_WAKE, 1) = 0
> [pid 6768] pwrite(8, "\0\0\0\
> [pid 6768] fsync(8 <unfinished ...>
> [pid 6765] <... futex resumed> ) = 1
> [pid 6765] sched_yield() = 0
> [pid 6765] futex(0x3dd0192c, FUTEX_WAIT, 1, NULL <unfinished ...>
> [pid 6768] <... fsync resumed> ) = 0
> [pid 6768] futex(0x3dd0192c, FUTEX_CMP_REQUEUE, 1, 2147483647, 0x3dd018f0, 0) = 1
> [pid 6768] futex(0x2082cd2c, FUTEX_WAIT, 3, NULL <unfinished ...>
> [pid 6765] <... futex resumed> ) = 0
> [pid 6765] futex(0x3dd018f0, FUTEX_WAKE, 1) = 0
> [pid 6765] mmap(NULL, 36962304, PROT_READ|
> [pid 6765] mmap(NULL, 36962304, PROT_READ|
> [pid 6765] mmap(NULL, 147841024, PROT_READ|
> [pid 6765] open("/
> [pid 6765] unlink(
> [pid 6765] dup(9) = 10
> [pid 6765] close(9) = 0
> [pid 6765] fcntl(10, F_GETFL) = 0x8002 (flags O_RDWR|O_LARGEFILE)
> [pid 6765] fstat(10, {st_mode=
> [pid 6765] mmap(NULL, 4096, PROT_READ|
> [pid 6765] lseek(10, 0, SEEK_CUR) = 0
> [pid 6765] pread(3, "\0\0\0\
> [pid 6765] pread(3, "\0\0\0\
> [pid 6765] pread(3, "\0\0\0\
> [pid 6765] pread(3, "\0\0\0\
> [pid 6765] pread(3, "\0\0\0\
>
> At this point it just sits there. I've taken a 2nd backup from a 2nd
> DB server and have the same results. Backups were taken via tar stream
> over ssh.
>
> ** Affects: percona-xtrabackup
> Importance: Undecided
> Status: New
>
-- www.mysqlperfor manceblog. com www.percona. com/
Vadim Tkachenko, CTO
Percona Inc.
ICQ: 369-510-335, Skype: vadimtk153, Phone +1-888-401-3403
MySQL Performance Blog - http://
MySQL Consulting http://
Attend the 2009 Percona Performance Conference conferences. percona. com/
April 22-23 - http://