Oh, for what it's worth, the issue gets worse with time...:
InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages InnoDB: from the doublewrite buffer... InnoDB: Last MySQL binlog file position 0 22051, file name mysql-bin.000008 InnoDB: 128 rollback segment(s) are active. InnoDB: Waiting for purge to start 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'mysql/innodb_index_stats' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'mysql/innodb_table_stats' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/EmployeeLogin' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Company' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Account' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/GeneralLedger' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Payment' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/PaymentDetail' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CashDrawer' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Category' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Item' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/ItemInstance' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/InventoryLog' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CompanyConfiguration' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CompanyFeature' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CompanyHours' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Company_Tr' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Customer' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CustomerLogin' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/CustomerText_Tr' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Transaction' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Contract' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Employee' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/FilterPreset' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/StoredFile' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/TaxRate' InnoDB: in InnoDB data dictionary has unknown flags 50. 2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/TransactionStatus' InnoDB: in InnoDB data dictionary has unknown flags 50. InnoDB: 5.6.15 started; log sequence number 8358353
Oh, for what it's worth, the issue gets worse with time...:
InnoDB: Reading tablespace information from the .ibd files... innodb_ index_stats' innodb_ table_stats' EmployeeLogin' GeneralLedger' PaymentDetail' CashDrawer' Category' ItemInstance' InventoryLog' CompanyConfigur ation' CompanyFeature' CompanyHours' Company_ Tr' Customer' CustomerLogin' CustomerText_ Tr' Transaction' Contract' Employee' FilterPreset' StoredFile' TransactionStat us'
InnoDB: Restoring possible half-written data pages
InnoDB: from the doublewrite buffer...
InnoDB: Last MySQL binlog file position 0 22051, file name mysql-bin.000008
InnoDB: 128 rollback segment(s) are active.
InnoDB: Waiting for purge to start
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'mysql/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'mysql/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Company'
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Account'
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Payment'
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/Item'
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/TaxRate'
InnoDB: in InnoDB data dictionary has unknown flags 50.
2014-04-04 23:04:51 7f5ded3f3700 InnoDB: Warning: table 'prod00009/
InnoDB: in InnoDB data dictionary has unknown flags 50.
InnoDB: 5.6.15 started; log sequence number 8358353