It sounds like there also may be an issue due to the way you updated. Moving forward, by way of the PPA, it'll update automagically but a manual update simply needs the new origami file to overwrite the previous.
You can also try to reset the team / name via:
./origami name -u user -t team
Can you also please run:
ls -hal /var/lib/origami/
ls -hal /var/lib/folding/
we can check the user / team that are configured in origami using:
grep 'username' /var/lib/ origami/ foldingathome/ CPU*/client. cfg origami/ foldingathome/ CPU*/client. cfg
grep 'team' /var/lib/
It sounds like there also may be an issue due to the way you updated. Moving forward, by way of the PPA, it'll update automagically but a manual update simply needs the new origami file to overwrite the previous.
You can also try to reset the team / name via:
./origami name -u user -t team
Can you also please run:
ls -hal /var/lib/origami/
ls -hal /var/lib/folding/