Comment 2 for bug 1788676

What appears to be happening is that when a simulation is started through the KiCAD GUI, the .raw file from the previous simulation gets written. Thus, a simulation must be run twice after any changes if you want to update the .raw output. I've updated my installation:

Application: kicad
Version: 5.0.1-33cea8e~67~ubuntu18.04.1, release build
Libraries:
    wxWidgets 3.0.4
    libcurl/7.58.0 OpenSSL/1.1.0g zlib/1.2.11 libidn2/2.0.4 libpsl/0.19.1 (+libidn2/2.0.4) nghttp2/1.30.0 librtmp/2.3
Platform: Linux 4.15.0-36-generic x86_64, 64 bit, Little endian, wxGTK
Build Info:
    wxWidgets: 3.0.4 (wchar_t,wx containers,compatible with 2.8) GTK+ 2.24
    Boost: 1.65.1
    OpenCASCADE Community Edition: 6.9.1
    Curl: 7.58.0
    Compiler: GCC 7.3.0 with C++ ABI 1011

Build settings:
    USE_WX_GRAPHICS_CONTEXT=OFF
    USE_WX_OVERLAY=OFF
    KICAD_SCRIPTING=ON
    KICAD_SCRIPTING_MODULES=ON
    KICAD_SCRIPTING_WXPYTHON=OFF
    KICAD_SCRIPTING_ACTION_MENU=ON
    BUILD_GITHUB_PLUGIN=ON
    KICAD_USE_OCE=ON
    KICAD_USE_OCC=OFF
    KICAD_SPICE=ON