This issue should have no effect on 1.25 deployments. Users will have to run update-alternatives after upgrading no matter what. Running it now results in restoring juju-1.25, which is the desired outcome. After a new package for 2.0 is uploaded that supports using update-alternatives (and thus this bug is fixed), it will allow you to easily toggle between them as expected. That will be the only change from the current setup.
This issue should have no effect on 1.25 deployments. Users will have to run update-alternatives after upgrading no matter what. Running it now results in restoring juju-1.25, which is the desired outcome. After a new package for 2.0 is uploaded that supports using update-alternatives (and thus this bug is fixed), it will allow you to easily toggle between them as expected. That will be the only change from the current setup.