[RHD] Work on bug #567214; Refactoring to decouple IndexMatcher from AlignmentTable. Goal is to make the IndexMatcher work with anything that contains Tokens, whether that is a Witness, AlignmentTable or a VariantGraph. The IndexMatcher should be able to compare a Witness with a Witness, an AlignmentTable with a Witness or a VariantGraph with a Witness.
Next step after this refactoring is to make the new IndexMatcher work with the VariantGraph I prototyped earlier.
Started work on this bug in lp:collatex/1.0development branch.
[RHD] Work on bug #567214; Refactoring to decouple IndexMatcher from AlignmentTable. Goal is to make the IndexMatcher work with anything that contains Tokens, whether that is a Witness, AlignmentTable or a VariantGraph. The IndexMatcher should be able to compare a Witness with a Witness, an AlignmentTable with a Witness or a VariantGraph with a Witness.
Next step after this refactoring is to make the new IndexMatcher work with the VariantGraph I prototyped earlier.