r-cran-genetics version 1.3.6-2 FTBFS on i386 in precise

Bug #935401 reported by Andreas Moog
6
This bug affects 1 person
Affects Status Importance Assigned to Milestone
r-cran-combinat (Ubuntu)
Fix Released
High
Andreas Moog
Precise
Fix Released
High
Andreas Moog
r-cran-genetics (Ubuntu)
Fix Released
High
Andreas Moog
Precise
Fix Released
High
Andreas Moog

Bug Description

This is a semi-automatic report based on the latest archive rebuild results [1].
Apologies if it reaches you in error.

Excerpt from the buildlog:

dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
    xvfb-run -a \
    R CMD INSTALL -l /build/buildd/r-cran-genetics-1.3.6/debian/r-cran-genetics/usr/lib/R/site-library --clean \
      . ; \
  else \
    R CMD INSTALL -l /build/buildd/r-cran-genetics-1.3.6/debian/r-cran-genetics/usr/lib/R/site-library \
     --clean . ;\
  fi
* installing *source* package 'genetics' ...
** R
** data
** inst
** preparing package for lazy loading
Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  package 'combinat' does not have a NAMESPACE and should be re-installed
ERROR: lazy loading failed for package 'genetics'
* removing '/build/buildd/r-cran-genetics-1.3.6/debian/r-cran-genetics/usr/lib/R/site-library/genetics'
make: *** [R_any_arch] Error 1
dpkg-buildpackage: error: /usr/bin/fakeroot debian/rules binary gave error exit status 2
******************************************************************************
Build finished at 20120210-0828
FAILED [dpkg-buildpackage died]

The full buidlog can be found at https://launchpad.net/ubuntu/+archive/test-rebuild-20120201/+build/3168988/+files/buildlog_ubuntu-precise-i386.r-cran-genetics_1.3.6-2_FAILEDTOBUILD.txt.gz.

[1] http://people.ubuntuwire.org/~wgrant/rebuild-ftbfs-test/test-rebuild-20120201-precise.html

Tags: ftbfs precise
Andreas Moog (ampelbein)
Changed in r-cran-genetics (Ubuntu):
importance: Undecided → High
Revision history for this message
Andreas Moog (ampelbein) wrote :

r-cran-combinat needs to be rebuilt against the new r-base.

Changed in r-cran-combinat (Ubuntu Precise):
status: New → In Progress
importance: Undecided → High
assignee: nobody → Andreas Moog (amoog)
Changed in r-cran-genetics (Ubuntu Precise):
assignee: nobody → Andreas Moog (amoog)
Changed in r-cran-combinat (Ubuntu Precise):
status: In Progress → Fix Committed
Changed in r-cran-genetics (Ubuntu Precise):
status: New → In Progress
Revision history for this message
Launchpad Janitor (janitor) wrote :

This bug was fixed in the package r-cran-combinat - 0.0-8-2build1

---------------
r-cran-combinat (0.0-8-2build1) precise; urgency=low

  * Rebuild against latest r-base (LP: #935401)
 -- Andreas Moog <email address hidden> Wed, 29 Feb 2012 19:47:53 +0100

Changed in r-cran-combinat (Ubuntu Precise):
status: Fix Committed → Fix Released
Revision history for this message
Andreas Moog (ampelbein) wrote :

builds fine now.

Changed in r-cran-genetics (Ubuntu Precise):
status: In Progress → Fix Released
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