Please sync bioperl 1.6.0-1 (universe) from Debian experimental (main).
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
bioperl (Ubuntu) |
Fix Released
|
Wishlist
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Unassigned |
Bug Description
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affects ubuntu/bioperl
status new
importance wishlist
subscribe ubuntu-
Please sync bioperl 1.6.0-1 (universe) from Debian experimental (main).
Changelog since current jaunty version 1.5.2.102-3:
bioperl (1.6.0-1) experimental; urgency=low
[ Charles Plessy ]
* debian/control
- Updated dependancies according to the new upstream release.
- Added the CPAN dependancies of BioPerl to Build-Depends-Indep in order to
run the tests at build time.
- Added bioperl-run to the recommended packages.
- Updated my email address.
- Uses Debhelper 7 (debian/compat modified accordingly).
* debian/patches: removed as not needed (no downloads by default).
* debian/rules:
- Uses Build.PL instead of Makefile.PL.
- Tests disabled for the experimental upload: not all dependancies are available yet.
* debian/
* debian/watch: BioPerl is now mixed case.
[ David Paleino ]
* New upstream stable release:
- fixes Bio::AlignIO:
- New modules, deprecated modules,⦠please consult Upsteam documents in
/
* debian/control:
- fields values rewrapped to easily spot diffs in commit mails
- dropped B-D-I versioning on perl, since Etch already has a greater
version
- Standards-Version bumped to 3.8.0 (no changes needed).
-- Charles Plessy <email address hidden> Mon, 26 Jan 2009 12:58:28 +0900
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Changed in bioperl (Ubuntu): | |
status: | Incomplete → Confirmed |
It FTBFS on i686.
Installing /tmp/buildd/ bioperl- 1.6.0/debian/ bioperl/ usr/bin/ bp_taxonomy2tre e.pl bioperl- 1.6.0/debian/ bioperl/ usr/lib/ perl5/i486- linux-gnu- thread- multi/auto/ Bio/.packlist symlink_ script. pl bioperl- 1.6.0/debian/ bioperl/ usr/lib/ perl5/powerpc- linux-gnu- thread- multi/auto/ Bio/ bioperl- 1.6.0/debian/ bioperl/ usr/lib/ perl5/powerpc- linux-gnu- thread- multi/auto/ Bio/': No such file or directory pbuilder/ build// 6118 and its subdirectories
Writing /tmp/buildd/
/usr/bin/perl maintenance/
Will try to install symlinks to /usr/local/bin
find debian/bioperl -type f -name .packlist | xargs rm
rmdir /tmp/buildd/
rmdir: failed to remove `/tmp/buildd/
make: *** [install-stamp] Error 1
dpkg-buildpackage: failure: fakeroot debian/rules binary gave error exit status 2
pbuilder: Failed autobuilding of package
-> Aborting with an error
-> unmounting dev/pts filesystem
-> unmounting proc filesystem
-> cleaning the build env
-> removing directory /var/cache/