fenics-dolfinx: FTBFS with Python 3.12

[Graham Inggs]

fenics-dolfinx 1:0.7.3-3 has been FTBFS since it was auto-sync’d from Debian:

Running tests...
/usr/bin/ctest --force-new-ctest-process
Test project /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test
    Start 1: unittests
1/1 Test #1: unittests ........................***Failed 0.29 sec
*** buffer overflow detected ***: terminated
Randomness seeded to: 3233962283

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
unittests is a Catch2 v3.4.0 host application.
Run with -? for options

-------------------------------------------------------------------------------
Fides output
-------------------------------------------------------------------------------
./cpp/test/io.cpp:82
...............................................................................

./cpp/test/io.cpp:82: FAILED:
due to a fatal error condition:
  SIGABRT - Abort (abnormal termination) signal

===============================================================================
test cases: 10 | 9 passed | 1 failed
assertions: 11121 | 11120 passed | 1 failed

unittests:22236 terminated with signal 6 at PC=7f3dab14eb1c SP=7ffe81ab9e10. Backtrace:
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7f3dab14eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7f3dab0f526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7f3dab0d88ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7f3dab0d97b6]
/lib/x86_64-linux-gnu/libc.so.6(+0x136c09)[0x7f3dab1e6c09]
/lib/x86_64-linux-gnu/libc.so.6(+0x1365c4)[0x7f3dab1e65c4]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vsprintf+0x0)[0x7f3dab1389f0]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0xaf)[0x7f3dab1e7e5f]
/usr/lib/petscdir/petsc3.19/x86_64-linux-gnu-real/lib/libpetsc_real.so.3.19(ps_make_timer_name_+0xef)[0x7f3dabd8852f]
/lib/x86_64-linux-gnu/libadios2_mpi_core.so.2(_ZN6adios24core6engine9BP5Writer17MarshalAttributesEv+0xbe7)[0x7f3da9e175e7]
/lib/x86_64-linux-gnu/libadios2_mpi_core.so.2(_ZN6adios24core6engine9BP5Writer7EndStepEv+0x137)[0x7f3da9e1cfe7]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x56ae5)[0x55aa7fe00ae5]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x5215b)[0x55aa7fdfc15b]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0xbcb87)[0x55aa7fe66b87]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0xbdd53)[0x55aa7fe67d53]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0xbe280)[0x55aa7fe68280]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x9015b)[0x55aa7fe3a15b]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x9050e)[0x55aa7fe3a50e]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x367ed)[0x55aa7fde07ed]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f3dab0da1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f3dab0da28b]
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-real/run_test/unittests(+0x37545)[0x55aa7fde1545]

0% tests passed, 1 tests failed out of 1

Total Test time (real) = 0.29 sec

The following tests FAILED:
   1 - unittests (Failed)
Errors while running CTest

[Graham Inggs (ginggs)]

This failure blocks the petsc 3.19 and python3-defaults transitions.

Please remove the following packages from Noble:

fenics-dolfinx | 1:0.7.2-2 | noble/universe | source
fenics | 2:0.7.0.1 | noble/universe | source
dolfinx-mpc | 0.7.0.post1-1build1 | noble/universe | source
fenicsx-performance-tests | 0.7.0~git20231007.4ba90a6-1 | noble/universe | source

[Graham Inggs (ginggs)]

$ reverse-depends src:fenics-dolfinx
Reverse-Recommends
==================
* fenicsx-performance-tests-source
* fenicsx-performance-tests-source
* science-engineering-dev (for libdolfinx-dev)
* science-engineering-dev (for python3-dolfinx)
* science-mathematics-dev (for python3-dolfinx)
* science-mathematics-dev (for libdolfinx-dev)
* science-physics-dev (for python3-dolfinx)
* science-physics-dev (for libdolfinx-dev)

Reverse-Depends
===============
* fenicsx (for python3-dolfinx)
* fenicsx (for libdolfinx-dev)
* fenicsx (for dolfinx-doc)
* fenicsx-performance-tests [amd64 arm64 armhf ppc64el s390x]
* libdolfinx-mpc0.7 [amd64 arm64 armhf ppc64el s390x]
* python3-dolfinx-mpc [amd64 arm64 armhf ppc64el s390x]
* python3-dolfinx-mpc [amd64 arm64 armhf ppc64el s390x]

Packages without architectures listed are reverse-dependencies in: amd64, arm64, armhf, i386, ppc64el, s390x

$ reverse-depends src:fenics-dolfinx -a source
Reverse-Testsuite-Triggers
==========================
* dolfinx-mpc (for python3-dolfinx)
* fenicsx-performance-tests (for libdolfinx-dev)
* fenicsx-performance-tests (for libdolfinx-real-dev)

Reverse-Build-Depends
=====================
* dolfinx-mpc (for python3-dolfinx-real)
* dolfinx-mpc (for libdolfinx-dev)
* dolfinx-mpc (for python3-dolfinx)
* fenicsx-performance-tests (for libdolfinx-dev)
* fenicsx-performance-tests (for libdolfinx-real-dev)

[Graham Inggs (ginggs)]

$ reverse-depends src:fenics
Reverse-Recommends
==================
* science-engineering (for fenics)
* science-mathematics (for fenics)
* science-mathematics-dev (for fenics)
* science-physics-dev (for fenics)

Packages without architectures listed are reverse-dependencies in: amd64, arm64, armhf, i386, ppc64el, s390x

$ reverse-depends src:fenics -a source
No reverse dependencies found

[Graham Inggs (ginggs)]

$ reverse-depends src:dolfinx-mpc

$ reverse-depends src:dolfinx-mpc -a source
Reverse-Testsuite-Triggers
==========================
* fenics (for python3-dolfinx-mpc)

[Graham Inggs (ginggs)]

$ reverse-depends src:fenicsx-performance-tests

$ reverse-depends src:fenicsx-performance-tests -a source
No reverse dependencies found

[Matthias Klose (doko)]

Removing packages from noble:
 fenics 2:0.7.0.1 in noble
  fenics 2:0.7.0.1 in noble amd64
  fenics 2:0.7.0.1 in noble arm64
  fenics 2:0.7.0.1 in noble armhf
  fenics 2:0.7.0.1 in noble ppc64el
  fenics 2:0.7.0.1 in noble riscv64
  fenics 2:0.7.0.1 in noble s390x
  fenicsx 2:0.7.0.1 in noble amd64
  fenicsx 2:0.7.0.1 in noble arm64
  fenicsx 2:0.7.0.1 in noble armhf
  fenicsx 2:0.7.0.1 in noble i386
  fenicsx 2:0.7.0.1 in noble ppc64el
  fenicsx 2:0.7.0.1 in noble riscv64
  fenicsx 2:0.7.0.1 in noble s390x
 fenics-dolfinx 1:0.7.2-2 in noble
  dolfinx-doc 1:0.7.2-2 in noble amd64
  dolfinx-doc 1:0.7.2-2 in noble arm64
  dolfinx-doc 1:0.7.2-2 in noble armhf
  dolfinx-doc 1:0.7.2-2 in noble i386
  dolfinx-doc 1:0.7.2-2 in noble ppc64el
  dolfinx-doc 1:0.7.2-2 in noble riscv64
  dolfinx-doc 1:0.7.2-2 in noble s390x
  libdolfinx-complex-dev 1:0.7.2-2 in noble amd64
  libdolfinx-complex-dev 1:0.7.2-2 in noble arm64
  libdolfinx-complex-dev 1:0.7.2-2 in noble armhf
  libdolfinx-complex-dev 1:0.7.2-2 in noble ppc64el
  libdolfinx-complex-dev 1:0.7.2-2 in noble riscv64
  libdolfinx-complex-dev 1:0.7.2-2 in noble s390x
  libdolfinx-complex0.7 1:0.7.2-2 in noble amd64
  libdolfinx-complex0.7 1:0.7.2-2 in noble arm64
  libdolfinx-complex0.7 1:0.7.2-2 in noble armhf
  libdolfinx-complex0.7 1:0.7.2-2 in noble ppc64el
  libdolfinx-complex0.7 1:0.7.2-2 in noble riscv64
  libdolfinx-complex0.7 1:0.7.2-2 in noble s390x
  libdolfinx-dev 1:0.7.2-2 in noble amd64
  libdolfinx-dev 1:0.7.2-2 in noble arm64
  libdolfinx-dev 1:0.7.2-2 in noble armhf
  libdolfinx-dev 1:0.7.2-2 in noble ppc64el
  libdolfinx-dev 1:0.7.2-2 in noble riscv64
  libdolfinx-dev 1:0.7.2-2 in noble s390x
  libdolfinx-real-dev 1:0.7.2-2 in noble amd64
  libdolfinx-real-dev 1:0.7.2-2 in noble arm64
  libdolfinx-real-dev 1:0.7.2-2 in noble armhf
  libdolfinx-real-dev 1:0.7.2-2 in noble ppc64el
  libdolfinx-real-dev 1:0.7.2-2 in noble riscv64
  libdolfinx-real-dev 1:0.7.2-2 in noble s390x
  libdolfinx-real0.7 1:0.7.2-2 in noble amd64
  libdolfinx-real0.7 1:0.7.2-2 in noble arm64
  libdolfinx-real0.7 1:0.7.2-2 in noble armhf
  libdolfinx-real0.7 1:0.7.2-2 in noble ppc64el
  libdolfinx-real0.7 1:0.7.2-2 in noble riscv64
  libdolfinx-real0.7 1:0.7.2-2 in noble s390x
  python3-dolfinx 1:0.7.2-2 in noble amd64
  python3-dolfinx 1:0.7.2-2 in noble arm64
  python3-dolfinx 1:0.7.2-2 in noble armhf
  python3-dolfinx 1:0.7.2-2 in noble ppc64el
  python3-dolfinx 1:0.7.2-2 in noble riscv64
  python3-dolfinx 1:0.7.2-2 in noble s390x
  python3-dolfinx-complex 1:0.7.2-2 in noble amd64
  python3-dolfinx-complex 1:0.7.2-2 in noble arm64
  python3-dolfinx-complex 1:0.7.2-2 in noble armhf
  python3-dolfinx-complex 1:0.7.2-2 in noble ppc64el
  python3-dolfinx-complex 1:0.7.2-2 in noble riscv64
  python3-dolfinx-complex 1:0.7.2-2 in noble s390x
  python3-dolfinx-real 1:0.7.2-2 in noble amd64
  python3-dolfinx-real 1:0.7.2-2 in noble arm64
  python3-dolfinx-real 1:0.7.2-2 in noble armhf
  python3-dolfinx-real 1:0.7.2-2 in noble ppc64el
  python3-dolfinx-real 1:0.7.2-2 in noble riscv64
  python3-dolfinx-real 1:0.7.2-2 in noble s390x
 dolfinx-mpc 0.7.0.post1-1build1 in noble
  libdolfinx-mpc-dev 0.7.0.post1-1build1 in no...

[Matthias Klose (doko)]

Removing packages from noble-proposed:
 fenics-dolfinx 1:0.7.3-3 in noble
  libdolfinx-complex-dev 1:0.7.3-3 in noble armhf
  libdolfinx-complex-dev 1:0.7.3-3 in noble riscv64
  libdolfinx-complex0.7 1:0.7.3-3 in noble armhf
  libdolfinx-complex0.7 1:0.7.3-3 in noble riscv64
  libdolfinx-dev 1:0.7.3-3 in noble armhf
  libdolfinx-dev 1:0.7.3-3 in noble riscv64
  libdolfinx-real-dev 1:0.7.3-3 in noble armhf
  libdolfinx-real-dev 1:0.7.3-3 in noble riscv64
  libdolfinx-real0.7 1:0.7.3-3 in noble armhf
  libdolfinx-real0.7 1:0.7.3-3 in noble riscv64
  python3-dolfinx 1:0.7.3-3 in noble armhf
  python3-dolfinx 1:0.7.3-3 in noble riscv64
  python3-dolfinx-complex 1:0.7.3-3 in noble armhf
  python3-dolfinx-complex 1:0.7.3-3 in noble riscv64
  python3-dolfinx-real 1:0.7.3-3 in noble armhf
  python3-dolfinx-real 1:0.7.3-3 in noble riscv64
Comment: LP: #2053000, remove fenics & dolfin packages, ftbfs
1 package successfully removed.
Removing packages from noble-proposed:
 dolfinx-mpc 0.7.2-1 in noble
  libdolfinx-mpc-dev 0.7.2-1 in noble armhf
  libdolfinx-mpc-dev 0.7.2-1 in noble riscv64
  libdolfinx-mpc0.7 0.7.2-1 in noble armhf
  libdolfinx-mpc0.7 0.7.2-1 in noble riscv64
  python3-dolfinx-mpc 0.7.2-1 in noble armhf
  python3-dolfinx-mpc 0.7.2-1 in noble riscv64
Comment: LP: #2053000, remove fenics & dolfin packages, ftbfs
1 package successfully removed.
Removing packages from noble-proposed:
 fenicsx-performance-tests 0.7.2-1 in noble
  fenicsx-performance-tests 0.7.2-1 in noble amd64
  fenicsx-performance-tests 0.7.2-1 in noble arm64
  fenicsx-performance-tests 0.7.2-1 in noble armhf
  fenicsx-performance-tests 0.7.2-1 in noble ppc64el
  fenicsx-performance-tests 0.7.2-1 in noble riscv64
  fenicsx-performance-tests 0.7.2-1 in noble s390x
  fenicsx-performance-tests-source 0.7.2-1 in noble amd64
  fenicsx-performance-tests-source 0.7.2-1 in noble arm64
  fenicsx-performance-tests-source 0.7.2-1 in noble armhf
  fenicsx-performance-tests-source 0.7.2-1 in noble i386
  fenicsx-performance-tests-source 0.7.2-1 in noble ppc64el
  fenicsx-performance-tests-source 0.7.2-1 in noble riscv64
  fenicsx-performance-tests-source 0.7.2-1 in noble s390x
Comment: LP: #2053000, remove fenics & dolfin packages, ftbfs
1 package successfully removed.