Rebuilding r-bioc-biocgenerics with new R changes behaviour
Bug #1720516 reported by
Graham Inggs
This bug affects 1 person
| Affects | Status | Importance | Assigned to | Milestone | |
|---|---|---|---|---|---|
| r-base (Debian) |
Fix Released
|
Unknown
|
|||
| r-base (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
| r-bioc-biocgenerics (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
| r-bioc-iranges (Debian) |
Fix Released
|
Unknown
|
|||
| r-bioc-iranges (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
| r-bioc-s4vectors (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
| r-bioc-variantannotation (Ubuntu) |
Fix Released
|
Undecided
|
Unassigned | ||
Bug Description
Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev
3.4.1.20170921-1 or 3.4.2-1 seems to cause the eventual failure of
autopkgtests in r-bioc-iranges and r-bioc-
IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures
ERROR in test_AtomicList
ERROR in test_AtomicList
VariantAnnotation RUnit Tests - 80 test functions, 1 error, 0 failures
ERROR in test_VRanges_vcf: Error in match.arg(method) : 'arg' must be of length 1
| description: | updated |
| Changed in r-base (Debian): | |
| status: | Unknown → New |
| Changed in r-base (Debian): | |
| status: | New → Confirmed |
| affects: | r-base (Debian) → r-bioc-s4vectors (Debian) |
| Changed in r-base (Ubuntu): | |
| status: | New → Invalid |
| Changed in r-bioc-biocgenerics (Ubuntu): | |
| status: | New → Invalid |
| Changed in r-bioc-variantannotation (Ubuntu): | |
| status: | New → Invalid |
| Changed in r-bioc-iranges (Debian): | |
| status: | Unknown → Confirmed |
| Changed in r-bioc-variantannotation (Ubuntu): | |
| status: | Invalid → New |
Revision history for this message
| Launchpad Janitor (janitor) wrote | #1 |
| Changed in r-bioc-s4vectors (Ubuntu): | |
| status: | New → Fix Released |
Revision history for this message
| Launchpad Janitor (janitor) wrote | #2 |
| Changed in r-bioc-iranges (Ubuntu): | |
| status: | New → Fix Released |
Revision history for this message
| Graham Inggs (ginggs) wrote | #3 |
| Changed in r-bioc-variantannotation (Ubuntu): | |
| status: | New → Fix Released |
| Changed in r-base (Ubuntu): | |
| status: | Invalid → In Progress |
| Changed in r-bioc-biocgenerics (Ubuntu): | |
| status: | Invalid → New |
| Changed in r-bioc-iranges (Debian): | |
| status: | Confirmed → Fix Released |
Revision history for this message
| Graham Inggs (ginggs) wrote | #4 |
| affects: | r-bioc-s4vectors (Debian) → r-base (Debian) |
| Changed in r-base (Ubuntu): | |
| status: | In Progress → Fix Committed |
| Changed in r-bioc-biocgenerics (Ubuntu): | |
| status: | New → Fix Committed |
Revision history for this message
| Launchpad Janitor (janitor) wrote | #5 |
| Changed in r-base (Ubuntu): | |
| status: | Fix Committed → Fix Released |
| Changed in r-bioc-biocgenerics (Ubuntu): | |
| status: | Fix Committed → Fix Released |
| Changed in r-base (Debian): | |
| status: | Confirmed → Fix Released |
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This bug was fixed in the package r-bioc-s4vectors - 0.14.3-1ubuntu1
---------------
r-bioc-s4vectors (0.14.3-1ubuntu1) artful; urgency=medium
* Fix compatibility with R 3.4.2 (LP: #1720516)
-- Graham Inggs <email address hidden> Wed, 04 Oct 2017 05:17:54 +0000