Comment 2 for bug 1485055

You can use alias rules for directory symlinks - add them to /etc/apparmor.d/tunables/alias. This avoids the need to modify all profiles.

For example, my /tmp/ is a symlink to /home/sys-tmp/, and the alias rule for it is
    alias /tmp/ -> /home/sys-tmp/,

Another possible solution is using mount --bind instead of symlinks.