Jon Hill

Related bugs


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Critical
In Progress
#1026041 Error checking for diagnostic field dependencies does not work when the diagnostic is dependent on a field that is hidden somewhere in the options tree
Fluidity 10
Critical
In Progress
#1333749 Multiple substitution stages lead to incorrect final subs
Supertree Toolkit 6
Critical
Fix Committed
#1404160 Don't warn when subbing "only existing"
Supertree Toolkit 6
Critical
Fix Committed
#1413375 Data ind fails if the tree names are not "standard"
Supertree Toolkit 6
High
New
#987872 Diamond crashes on launch
Spud 6
High
Confirmed
#1006863 flredecomp fails with newer version of parmetis
Fluidity 6
High
New
#1234802 flredecomp exiting before completion with Intel on buildbot
Fluidity 6
High
Confirmed
#1266528 Comment that keep being 'lost' at opening of the file
Supertree Toolkit 6
High
Confirmed
#1404164 Add weights to nexus format
Supertree Toolkit 6
High
Fix Committed
#1703354 Taxa substitution failed due to unknown error
Supertree Toolkit 10
Medium
Fix Committed
#953905 create_param_sweep replaces wrong values into new .flml file(s)
Spud 10
Medium
In Progress
#1003539 Interpolation for periodic meshs clobbers fields
Fluidity 6
Medium
Confirmed
#1046337 Fluidity fails to compile with Intel 14
Fluidity 8
Medium
Incomplete
#1065262 Failure in checkpointing: stack smash on readVTKFile()
Fluidity 6
Medium
Confirmed
#1066865 temporalmax/min diagnostics with spin_up_time give incorrect results
Fluidity 6
Medium
Confirmed
#1076967 checkpointing incorrect for simulations with . in name
Fluidity 8
Medium
Confirmed
#1088860 Incorrect #ifndef in find_adjacent_element
Fluidity 6
Medium
New
#1088985 Velocity with prescribed regions also 'needs_initial_mesh'
Fluidity 6
Medium
In Progress
#1183080 Sigma layers fail in parallel when using flredecomp
Fluidity 6
Medium
Confirmed
#1225927 Difficulty in adding data in the comment section
Supertree Toolkit 6
Medium
Fix Committed
#1248217 def Val gives seg fault
Fluidity 6
Medium
Fix Committed
#1270859 Data independence data output doesn't save
Supertree Toolkit 6
Medium
Fix Committed
#1367330 Error while preparing to get eol.org taxonomy
Supertree Toolkit 6
Medium
Confirmed
#1389549 Error in add historical event with non-ascii data
Supertree Toolkit 6
Medium
Confirmed
#1404158 Importing subs files doesn't remove the taxa from left panel in gui
Supertree Toolkit 6
Medium
Confirmed
#1404162 Account for weighted trees in data ind
Supertree Toolkit 6
Low
In Progress
#813431 add_option in python interface returns "SPUD_NEW_KEY_WARNING"
Spud 6
Low
Incomplete
#856280 Error diff'ing two files
Spud 6
Low
Fix Committed
#863210 The 'About Diamond' window does not close when the 'Close' button is clicked.
Spud 6
Low
In Progress
#907343 Extrude to two surfaces sometimes behaves badly in parallel
Fluidity 6
Low
In Progress
#957363 project_velocity_to_continuous and superparametric issues
Fluidity 6
Low
In Progress
#1001273 checkpointing with moving mesh free surface broken
Fluidity 6
Low
Confirmed
#1040771 Fluidity doesn't currently support parmetis 4.0, which is the default for PETSC_3.3
Fluidity 18
Low
Fix Committed
#1088981 Incorrect number of faces for cubic elements
Fluidity 6
Low
New
#1088987 Number of nodes used instead of number of vertices
Fluidity 6
Low
Confirmed
#1134485 No warning if User gives a Material Volume Fraction of 1 for more than 1 material, in the same location
Fluidity 6
Low
Incomplete
#1197931 Diff doesn't work
Supertree Toolkit 6
Low
Fix Committed
#1380498 Auto name source doesn't take into account other source names
Supertree Toolkit 6
Low
Confirmed
#1404165 Add check box to auto-remove non-overlapping trees
Supertree Toolkit 6
Wishlist
Confirmed
#851862 feature request: add "copy spud path" to right-click on option
Spud 6
Wishlist
In Progress
#897337 scalar fields intended to be FIELD_TYPE_CONSTANT not allocated as constant in Populate_State
Fluidity 6
Wishlist
Confirmed
#930706 NetCDF reader bounds check incorrect
Fluidity 6
Wishlist
Confirmed
#1221099 Combining projects
Supertree Toolkit 6
Wishlist
Confirmed
#1221100 Ability to plot stats
Supertree Toolkit 6
Wishlist
New
#1291381 Import and export to NexML and PhyloXML formats
Supertree Toolkit 6
Wishlist
Confirmed
#1293668 Change file extension to Phylml (or some other ML)
Supertree Toolkit 6
Wishlist
New
#1404157 Allow selection of subset in data ind for removal
Supertree Toolkit 6
Wishlist
Confirmed
#1404161 Add a load in data when done check box
Supertree Toolkit 6
Undecided
New
#1066019 LinearRing Error
Meshing to Realistic Domains 6
Undecided
Incomplete
#1081598 Performance bug in Advection_Diffusion_DG.F90
Fluidity 6
Undecided
New
#1083775 Quadrature weights wrong for CV surface faces when the requested quadrature degree is greater than one.
Fluidity 6
Undecided
New
#1099852 Running on CX1 using ASCII mesh file dies immediately with no error
Fluidity 6
Undecided
New
#1118408 Incorrect coordinate space used for meshing
Meshing to Realistic Domains 6
Undecided
Confirmed
#1251138 test_gmsh_intel test needs twerking
Fluidity 6
Undecided
New
#1483640 Error: Failed to create matrix due to unknown error
Supertree Toolkit 6
Undecided
Fix Committed
#1656264 python-graphviz has changed output variables in Ubuntu 16.04
Supertree Toolkit 6
Undecided
New
#1855866 Error when creating matrix/exporting trees
Supertree Toolkit 6
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