Bug #681018 “Crash in last revision” : Bugs : Yade

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Anton Gladky (gladky-anton) wrote on 2010-11-24:

#1

backtrace Edit (24.9 KiB, text/plain)

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Anton Gladky (gladky-anton) wrote on 2010-11-24:

#2

testScript.py Edit (2.5 KiB, text/x-python)

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Václav Šmilauer (eudoxos) wrote on 2010-11-24:

#3

Hi Anton, it was the same problem as crash during generating docs. Try with 2568 and close if appropriate. Cheers!

Changed in yade:
assignee:	nobody → Václav Šmilauer (eudoxos)
status:	New → In Progress

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-11-24:

#4

Download full text (25.1 KiB)

Hi, Vaclav!
Thanks, but unfortunately I still get a crash:

****************************************************
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-EBaLiZ/tmp-0'
Aborted
****************************************************
And sometimes:

Welcome to Yade bzr2568 (debug build)
TCP python prompt on localhost:9000, auth cookie `seakyu'
XMLRPC info provider on http://localhost:21000
Running script testScript.py
Added 109 particles
Total number of elements is 109
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-NqH4Wa/tmp-0'
/tmp/yade-NqH4Wa/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
/tmp/yade-NqH4Wa/tmp-0:1: Error in sourced command file:
ptrace: Operation not permitted.
(gdb) [Thread debugging using libthread_db enabled]
[New Thread 0x7ffea0c26710 (LWP 29259)]
[New Thread 0x7ffea1427710 (LWP 29258)]
[New Thread 0x7ffea34f0710 (LWP 29257)]
[New Thread 0x7ffea4b1c710 (LWP 29256)]
[New Thread 0x7ffea531d710 (LWP 29255)]
0x00007ffec487111d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82 ../sysdeps/unix/syscall-template.S: No such file or directory.
in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7ffea531d710 (LWP 29255)):
#0 0x00007ffec373aff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1 0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2 0x00000000004a7c5e in call_function (f=Frame 0x2499410, for file /usr/lib/python2.6/SocketServe...

Hi, Vaclav!
Thanks, but unfortunately I still get a crash:

****************************************************
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-EBaLiZ/tmp-0'
Aborted
****************************************************
And sometimes:

Welcome to Yade bzr2568 (debug build)
TCP python prompt on localhost:9000, auth cookie `seakyu'
XMLRPC info provider on http://localhost:21000
Running script testScript.py
Added 109 particles
Total number of elements is 109
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69: const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-NqH4Wa/tmp-0'
/tmp/yade-NqH4Wa/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
/tmp/yade-NqH4Wa/tmp-0:1: Error in sourced command file:
ptrace: Operation not permitted.
(gdb) [Thread debugging using libthread_db enabled]
[New Thread 0x7ffea0c26710 (LWP 29259)]
[New Thread 0x7ffea1427710 (LWP 29258)]
[New Thread 0x7ffea34f0710 (LWP 29257)]
[New Thread 0x7ffea4b1c710 (LWP 29256)]
[New Thread 0x7ffea531d710 (LWP 29255)]
0x00007ffec487111d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82	../sysdeps/unix/syscall-template.S: No such file or directory.
	in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7ffea531d710 (LWP 29255)):
#0  0x00007ffec373aff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x2499410, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x245c770>, authenticated=[], socket=<_socketobject at remote 0x2408520>, server_address=('0.0.0.0', 9000), cookie='seakyu', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831b0>) at remote 0x243f4d0>) at remote 0x2410250>) at remote 0x23ffa70>, poll_interval=<float at remote 0x21d0ad0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x2499410, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x245c770>, authenticated=[], socket=<_socketobject at remote 0x2408520>, server_address=('0.0.0.0', 9000), cookie='seakyu', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831b0>) at remote 0x243f4d0>) at remote 0x2410250>) at remote 0x23ffa70>, poll_interval=<float at remote 0x21d0ad0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x240a7b0, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x24105e8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x0000000000537620 in function_call (func=<function at remote 0x24197d0>, arg=(<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x245c770>, authenticated=[], socket=<_socketobject at remote 0x2408520>, server_address=('0.0.0.0', 9000), cookie='seakyu', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831b0>) at remote 0x243f4d0>) at remote 0x2410250>) at remote 0x23ffa70>,), kw=0x0) at ../Objects/funcobject.c:524
#6  0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x24197d0>, arg=<unknown at remote 0x7ffea531c850>, kw=<unknown at remote 0x7ffea531c7d0>) at ../Objects/abstract.c:2492
#7  0x0000000000427dff in instancemethod_call (func=<function at remote 0x24197d0>, arg=(<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x245c770>, authenticated=[], socket=<_socketobject at remote 0x2408520>, server_address=('0.0.0.0', 9000), cookie='seakyu', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831b0>) at remote 0x243f4d0>) at remote 0x2410250>) at remote 0x23ffa70>,), kw=0x0) at ../Objects/classobject.c:2579
#8  0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x23f1f00>, arg=<unknown at remote 0x7ffea531c850>, kw=<unknown at remote 0x7ffea531c7d0>) at ../Objects/abstract.c:2492
#9  0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x23f1f00>, arg=(), kw=<unknown at remote 0x7ffea531c7d0>) at ../Python/ceval.c:3619
#10 0x00000000004d7d3d in t_bootstrap (boot_raw=0x24388d0) at ../Modules/threadmodule.c:425
#11 0x00007ffec48689ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#12 0x00007ffec374270d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#13 0x0000000000000000 in ?? ()

Thread 5 (Thread 0x7ffea4b1c710 (LWP 29256)):
#0  0x00007ffec373aff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x24b2080, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x245cbf0>, socket=<_socketobject at remote 0x2454520>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x247b518>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831e0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831e0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831e0>) at remote 0x2463990>) at remote 0x2463890>) at remote 0x244e518>, poll_interval=<float at remote 0x21d0ad0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x24b2080, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x245cbf0>, socket=<_socketobject at remote 0x2454520>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x247b518>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831e0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831e0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831e0>) at remote 0x2463990>) at remote 0x2463890>) at remote 0x244e518>, poll_interval=<float at remote 0x21d0ad0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x240a7b0, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x24105e8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x0000000000537620 in function_call (func=<function at remote 0x24197d0>, arg=(<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x245cbf0>, socket=<_socketobject at remote 0x2454520>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x247b518>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831e0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831e0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831e0>) at remote 0x2463990>) at remote 0x2463890>) at remote 0x244e518>,), kw=0x0) at ../Objects/funcobject.c:524
#6  0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x24197d0>, arg=<unknown at remote 0x7ffea4b1b850>, kw=<unknown at remote 0x7ffea4b1b7d0>) at ../Objects/abstract.c:2492
#7  0x0000000000427dff in instancemethod_call (func=<function at remote 0x24197d0>, arg=(<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x245cbf0>, socket=<_socketobject at remote 0x2454520>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x247b518>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7ffec4b831e0>, acquire=<built-in method acquire of thread.lock object at remote 0x7ffec4b831e0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7ffec4b831e0>) at remote 0x2463990>) at remote 0x2463890>) at remote 0x244e518>,), kw=0x0) at ../Objects/classobject.c:2579
#8  0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x2335e60>, arg=<unknown at remote 0x7ffea4b1b850>, kw=<unknown at remote 0x7ffea4b1b7d0>) at ../Objects/abstract.c:2492
#9  0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x2335e60>, arg=(), kw=<unknown at remote 0x7ffea4b1b7d0>) at ../Python/ceval.c:3619
#10 0x00000000004d7d3d in t_bootstrap (boot_raw=0x243a9f0) at ../Modules/threadmodule.c:425
#11 0x00007ffec48689ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#12 0x00007ffec374270d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#13 0x0000000000000000 in ?? ()

Thread 4 (Thread 0x7ffea34f0710 (LWP 29257)):
#0  0x00007ffec373aff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007ffea35cce2e in ?? () from /usr/lib/libtcl8.5.so.0
#2  0x00007ffec48689ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#3  0x00007ffec374270d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#4  0x0000000000000000 in ?? ()

Thread 3 (Thread 0x7ffea1427710 (LWP 29258)):
#0  0x00007ffec3705fbd in __libc_waitpid (pid=29260, stat_loc=<value optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007ffec369d7e9 in do_system (line=<value optimized out>) at ../sysdeps/posix/system.c:149
#2  0x00007ffec369db20 in __libc_system (line=<value optimized out>) at ../sysdeps/posix/system.c:190
#3  0x00007ffec2cb2353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007ffec368fa75 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007ffec36935c0 in *__GI_abort () at abort.c:92
#7  0x00007ffec3688941 in *__GI___assert_fail (assertion=0x7ffebdb9fff1 "b1", file=<value optimized out>, line=69, function=0x7ffebdbe05a0 "const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int)") at assert.c:81
#8  0x00007ffebd8fe400 in InteractionContainer::find (this=0x1ce1d00, id1=0, id2=1) at /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69
#9  0x00007ffebd8fe611 in InteractionContainer::requestErase (this=0x1ce1d00, id1=1, id2=0, force=true) at /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:88
#10 0x00007ffeac3148c4 in InteractionLoop::action (.omp_data_i=0x7ffea14267e0) at /home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:77
#11 0x00007ffeac304b21 in InteractionLoop::action (this=0x2f58b80) at /home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:63
#12 0x00007ffebd900bc4 in Scene::moveToNextTimeStep (this=0x1ce7e90) at /home/gladk/dem/yade/cleanCompDebug/yade/core/Scene.cpp:92
#13 0x00007ffebd907964 in SimulationFlow::singleAction (this=0x1c69b10) at /home/gladk/dem/yade/cleanCompDebug/yade/core/SimulationFlow.cpp:20
#14 0x00007ffebd90917e in ThreadWorker::callSingleAction (this=0x1c69b10) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadWorker.cpp:71
#15 0x00007ffebd908671 in ThreadRunner::call (this=0x1ceb2e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:53
#16 0x00007ffebd9083a3 in ThreadRunner::run (this=0x1ceb2e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:27
#17 0x00007ffebd9d426f in boost::_mfi::mf0<void, ThreadRunner>::operator() (this=0x31279d0, p=0x1ceb2e0) at /usr/include/boost/bind/mem_fn_template.hpp:49
#18 0x00007ffebd9c558a in boost::_bi::list1<boost::_bi::value<ThreadRunner*> >::operator()<boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list0> (this=0x31279e0, f=..., a=...) at /usr/include/boost/bind/bind.hpp:246
#19 0x00007ffebd9b1e01 in boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >::operator() (this=0x31279d0) at /usr/include/boost/bind/bind_template.hpp:20
#20 0x00007ffebd99e5b8 in boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >, void>::invoke (function_obj_ptr=...) at /usr/include/boost/function/function_template.hpp:153
#21 0x00007ffebda6f91b in boost::function0<void>::operator() (this=0x31279c8) at /usr/include/boost/function/function_template.hpp:1013
#22 0x00007ffebda484d0 in boost::detail::thread_data<boost::function0<void> >::run (this=0x31278c0) at /usr/include/boost/thread/detail/thread.hpp:56
#23 0x00007ffec23d4b70 in thread_proxy () from /usr/lib/libboost_thread.so.1.40.0
#24 0x00007ffec48689ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#25 0x00007ffec374270d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#26 0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7ffea0c26710 (LWP 29259)):
#0  0x00007ffec3705fbd in __libc_waitpid (pid=29261, stat_loc=<value optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007ffec369d7e9 in do_system (line=<value optimized out>) at ../sysdeps/posix/system.c:149
#2  0x00007ffec369db20 in __libc_system (line=<value optimized out>) at ../sysdeps/posix/system.c:190
#3  0x00007ffec2cb2353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007ffec368fa75 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007ffec36935c0 in *__GI_abort () at abort.c:92
#7  0x00007ffec3688941 in *__GI___assert_fail (assertion=0x7ffebdb9fff1 "b1", file=<value optimized out>, line=69, function=0x7ffebdbe05a0 "const boost::shared_ptr<Interaction>& InteractionContainer::find(int, int)") at assert.c:81
#8  0x00007ffebd8fe400 in InteractionContainer::find (this=0x1ce1d00, id1=52, id2=73) at /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:69
#9  0x00007ffebd8fe611 in InteractionContainer::requestErase (this=0x1ce1d00, id1=52, id2=73, force=true) at /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:88
#10 0x00007ffeac3148c4 in InteractionLoop::action (.omp_data_i=0x7ffea14267e0) at /home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:77
#11 0x00007ffebddb7a02 in ?? () from /usr/lib/libgomp.so.1
#12 0x00007ffec48689ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#13 0x00007ffec374270d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#14 0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7ffec4c69700 (LWP 29252)):
#0  0x00007ffec487111d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007ffea9049740 in pyOmega::wait (this=0x7ffec4b048e0) at py/wrapper/yadeWrapper.cpp:365
#2  0x00007ffea914c093 in boost::python::detail::invoke<int, void (pyOmega::*)(), boost::python::arg_from_python<pyOmega&> > (f=@0x1d46ec8, tc=...) at /usr/include/boost/python/detail/invoke.hpp:94
#3  0x00007ffea912a1f1 in boost::python::detail::caller_arity<1u>::impl<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> >::operator() (this=0x1d46ec8, args_=(<Omega at remote 0x7ffec4b048a0>,)) at /usr/include/boost/python/detail/caller.hpp:223
#4  0x00007ffea910e7df in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> > >::operator() (this=0x1d46ec0, args=(<Omega at remote 0x7ffec4b048a0>,), kw=0x0) at /usr/include/boost/python/object/py_function.hpp:38
#5  0x00007ffec13c1c2e in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/libboost_python-py26.so.1.40.0
#6  0x00007ffec13c1ed8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#7  0x00007ffec13c954b in boost::python::handle_exception_impl(boost::function0<void>) () from /usr/lib/libboost_python-py26.so.1.40.0
#8  0x00007ffec13be7d8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#9  0x000000000041f0c7 in PyObject_Call (func=<Boost.Python.function at remote 0x1d46ee0>, arg=<unknown at remote 0x7ffff16cccd0>, kw=<unknown at remote 0x7ffff16cccd0>) at ../Objects/abstract.c:2492
#10 0x00000000004a7378 in do_call (f=Frame 0x2503020, for file testScript.py, line 92, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3968
#11 call_function (f=Frame 0x2503020, for file testScript.py, line 92, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3773
#12 PyEval_EvalFrameEx (f=Frame 0x2503020, for file testScript.py, line 92, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#13 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x24525d0, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#14 0x00000000004a9742 in PyEval_EvalCode (co=0x7ffff16ccce0, globals=<unknown at remote 0x7ffff16cccd0>, locals=<unknown at remote 0x7ffff16cccd0>) at ../Python/ceval.c:541
#15 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0x7ffec4b9fb44 "testScript.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1339
#16 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7ffec4b9fb44 "testScript.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1325
#17 0x00000000004a0c37 in builtin_execfile (self=<value optimized out>, args=<value optimized out>) at ../Python/bltinmodule.c:794
#18 0x00000000004a7c5e in call_function (f=Frame 0x24b2740, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 152, in runScript (script='testScript.py'), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#19 PyEval_EvalFrameEx (f=Frame 0x24b2740, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 152, in runScript (script='testScript.py'), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#20 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ffec4b8b288, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=(<cell at remote 0x245eda8>, <cell at remote 0x245ee50>, <cell at remote 0x2464088>)) at ../Python/ceval.c:3000
#21 0x00000000004a7809 in fast_function (f=Frame 0x24b2280, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in userSession (qt4=False, runScript=<function at remote 0x244d488>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#22 call_function (f=Frame 0x24b2280, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in userSession (qt4=False, runScript=<function at remote 0x244d488>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#23 PyEval_EvalFrameEx (f=Frame 0x24b2280, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in userSession (qt4=False, runScript=<function at remote 0x244d488>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#24 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ffec4b8b300, globals=<value optimized out>, locals=<value optimized out>, args=0x7ffec4b915a0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x7ffec4af6fa8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#25 0x00000000004a7809 in fast_function (f=Frame 0x1bca350, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#26 call_function (f=Frame 0x1bca350, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#27 PyEval_EvalFrameEx (f=Frame 0x1bca350, for file ./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#28 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ffec4b8b918, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#29 0x00000000004a9742 in PyEval_EvalCode (co=0x7ffff16ccce0, globals=<unknown at remote 0x7ffff16cccd0>, locals=<unknown at remote 0x7ffff16cccd0>) at ../Python/ceval.c:541
#30 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0x7ffff16cef77 "./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7ffff16cdb70) at ../Python/pythonrun.c:1339
#31 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7ffff16cef77 "./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7ffff16cdb70) at ../Python/pythonrun.c:1325
#32 0x00000000004c9c24 in PyRun_SimpleFileExFlags (fp=<value optimized out>, filename=0x7ffff16cef77 "./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", closeit=1, flags=0x7ffff16cdb70) at ../Python/pythonrun.c:935
#33 0x000000000041a7ff in Py_Main (argc=-994570112, argv=<value optimized out>) at ../Modules/main.c:572
#34 0x00007ffec367ac4d in __libc_start_main (main=<value optimized out>, argc=<value optimized out>, ubp_av=<value optimized out>, init=<value optimized out>, fini=<value optimized out>, rtld_fini=<value optimized out>, stack_end=0x7ffff16cdc88) at libc-start.c:226
#35 0x00000000004199f9 in _start ()
Aborted

Revision history for this message

Václav Šmilauer (eudoxos) wrote on 2010-11-24:

#5

Oops, sorry, should be fine in 2569.

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-11-24: Re: [Bug 681018] Re: Crash in last revision

#6

Download full text (24.3 KiB)

Sorry, it still crashes....

python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]: Assertion `px != 0' failed.
python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]: Assertion `px != 0' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `SIGSEGV/SIGABRT handler
called; gdb batch file is `/tmp/yade-XQsdXX/tmp-0'
/tmp/yade-XQsdXX/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html
>
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html
>
This is free software: you are free to change and redistribute it.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
<http://www.gnu.org/software/gdb/bugs/>.
/tmp/yade-XQsdXX/tmp-0:1: Error in sourced command file:
ptrace: Operation not permitted.
(gdb) [Thread debugging using libthread_db enabled]
[New Thread 0x7ff80d9ee710 (LWP 32501)]
[New Thread 0x7ff80e1ef710 (LWP 32500)]
[New Thread 0x7ff8102b8710 (LWP 32499)]
[New Thread 0x7ff8118e4710 (LWP 32498)]
[New Thread 0x7ff8120e5710 (LWP 32497)]
0x00007ff83163911d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82 ../sysdeps/unix/syscall-template.S: No such file or directory.
in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7ff8120e5710 (LWP 32497)):
#0 0x00007ff830502ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1 0x00000000004f7013 in select_select (self=<value optimized out>,
args=<value optimized out>) at ../Modules/selectmodule.c:278
#2 0x00000000004a7c5e in call_function (f=Frame 0x223c410, for file
/usr/lib/python2.6/SocketServer.py, line 224, in serve_forever
(self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote
0x21ff770>, authenticated=[], socket=<_socketobject at remote 0x21ab520>,
server_address=('0.0.0.0', 9000), cookie='kseysu',
_BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1b0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1b0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1b0>) at remote 0x21e24d0>) at remote
0x21b3250>) at remote 0x21a2a70>, poll_interval=<float at remote 0x1f73ad0>,
r=[], w=[], e=[]), throwflag=<value optimized out>) at
../Python/ceval.c:3750
#3 PyEval_...

Sorry, it still crashes....

python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]: Assertion `px != 0' failed.
python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]: Assertion `px != 0' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `SIGSEGV/SIGABRT handler
called; gdb batch file is `/tmp/yade-XQsdXX/tmp-0'
/tmp/yade-XQsdXX/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html
>
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html
>
This is free software: you are free to change and redistribute it.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
<http://www.gnu.org/software/gdb/bugs/>.
/tmp/yade-XQsdXX/tmp-0:1: Error in sourced command file:
ptrace: Operation not permitted.
(gdb) [Thread debugging using libthread_db enabled]
[New Thread 0x7ff80d9ee710 (LWP 32501)]
[New Thread 0x7ff80e1ef710 (LWP 32500)]
[New Thread 0x7ff8102b8710 (LWP 32499)]
[New Thread 0x7ff8118e4710 (LWP 32498)]
[New Thread 0x7ff8120e5710 (LWP 32497)]
0x00007ff83163911d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82    ../sysdeps/unix/syscall-template.S: No such file or directory.
    in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7ff8120e5710 (LWP 32497)):
#0  0x00007ff830502ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>,
args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x223c410, for file
/usr/lib/python2.6/SocketServer.py, line 224, in serve_forever
(self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote
0x21ff770>, authenticated=[], socket=<_socketobject at remote 0x21ab520>,
server_address=('0.0.0.0', 9000), cookie='kseysu',
_BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1b0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1b0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1b0>) at remote 0x21e24d0>) at remote
0x21b3250>) at remote 0x21a2a70>, poll_interval=<float at remote 0x1f73ad0>,
r=[], w=[], e=[]), throwflag=<value optimized out>) at
../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x223c410, for file
/usr/lib/python2.6/SocketServer.py, line 224, in serve_forever
(self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote
0x21ff770>, authenticated=[], socket=<_socketobject at remote 0x21ab520>,
server_address=('0.0.0.0', 9000), cookie='kseysu',
_BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1b0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1b0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1b0>) at remote 0x21e24d0>) at remote
0x21b3250>) at remote 0x21a2a70>, poll_interval=<float at remote 0x1f73ad0>,
r=[], w=[], e=[]), throwflag=<value optimized out>) at
../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x21ad7b0, globals=<value
optimized out>, locals=<value optimized out>, args=0x2, argcount=<value
optimized out>, kws=<value optimized out>, kwcount=0, defs=0x21b35e8,
defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x0000000000537620 in function_call (func=<function at remote
0x21bc7d0>, arg=(<ThreadingTCPServer(RequestHandlerClass=<classobj at remote
0x21ff770>, authenticated=[], socket=<_socketobject at remote 0x21ab520>,
server_address=('0.0.0.0', 9000), cookie='kseysu',
_BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1b0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1b0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1b0>) at remote 0x21e24d0>) at remote
0x21b3250>) at remote 0x21a2a70>,), kw=0x0) at ../Objects/funcobject.c:524
#6  0x000000000041f0c7 in PyObject_Call (func=<function at remote
0x21bc7d0>, arg=<unknown at remote 0x7ff8120e4850>, kw=<unknown at remote
0x7ff8120e47d0>) at ../Objects/abstract.c:2492
#7  0x0000000000427dff in instancemethod_call (func=<function at remote
0x21bc7d0>, arg=(<ThreadingTCPServer(RequestHandlerClass=<classobj at remote
0x21ff770>, authenticated=[], socket=<_socketobject at remote 0x21ab520>,
server_address=('0.0.0.0', 9000), cookie='kseysu',
_BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1b0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1b0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1b0>) at remote 0x21e24d0>) at remote
0x21b3250>) at remote 0x21a2a70>,), kw=0x0) at ../Objects/classobject.c:2579
#8  0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote
0x2195eb0>, arg=<unknown at remote 0x7ff8120e4850>, kw=<unknown at remote
0x7ff8120e47d0>) at ../Objects/abstract.c:2492
#9  0x00000000004a1b03 in PyEval_CallObjectWithKeywords
(func=<instancemethod at remote 0x2195eb0>, arg=(), kw=<unknown at remote
0x7ff8120e47d0>) at ../Python/ceval.c:3619
#10 0x00000000004d7d3d in t_bootstrap (boot_raw=0x21db8d0) at
../Modules/threadmodule.c:425
#11 0x00007ff8316309ca in start_thread (arg=<value optimized out>) at
pthread_create.c:300
#12 0x00007ff83050a70d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#13 0x0000000000000000 in ?? ()

Thread 5 (Thread 0x7ff8118e4710 (LWP 32498)):
#0  0x00007ff830502ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>,
args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x2255080, for file
/usr/lib/python2.6/SocketServer.py, line 224, in serve_forever
(self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote
0x21ffbf0>, socket=<_socketobject at remote 0x21f7520>, encoding=None,
server_address=('0.0.0.0', 21000), logRequests=False,
allow_dotted_names=False, instance=<InfoProvider() at remote 0x221e518>,
allow_none=True, _BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1e0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1e0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1e0>) at remote 0x2206990>) at remote
0x2206890>) at remote 0x21f1518>, poll_interval=<float at remote 0x1f73ad0>,
r=[], w=[], e=[]), throwflag=<value optimized out>) at
../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x2255080, for file
/usr/lib/python2.6/SocketServer.py, line 224, in serve_forever
(self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote
0x21ffbf0>, socket=<_socketobject at remote 0x21f7520>, encoding=None,
server_address=('0.0.0.0', 21000), logRequests=False,
allow_dotted_names=False, instance=<InfoProvider() at remote 0x221e518>,
allow_none=True, _BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1e0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1e0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1e0>) at remote 0x2206990>) at remote
0x2206890>) at remote 0x21f1518>, poll_interval=<float at remote 0x1f73ad0>,
r=[], w=[], e=[]), throwflag=<value optimized out>) at
../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x21ad7b0, globals=<value
optimized out>, locals=<value optimized out>, args=0x2, argcount=<value
optimized out>, kws=<value optimized out>, kwcount=0, defs=0x21b35e8,
defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x0000000000537620 in function_call (func=<function at remote
0x21bc7d0>, arg=(<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj
at remote 0x21ffbf0>, socket=<_socketobject at remote 0x21f7520>,
encoding=None, server_address=('0.0.0.0', 21000), logRequests=False,
allow_dotted_names=False, instance=<InfoProvider() at remote 0x221e518>,
allow_none=True, _BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1e0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1e0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1e0>) at remote 0x2206990>) at remote
0x2206890>) at remote 0x21f1518>,), kw=0x0) at ../Objects/funcobject.c:524
#6  0x000000000041f0c7 in PyObject_Call (func=<function at remote
0x21bc7d0>, arg=<unknown at remote 0x7ff8118e3850>, kw=<unknown at remote
0x7ff8118e37d0>) at ../Objects/abstract.c:2492
#7  0x0000000000427dff in instancemethod_call (func=<function at remote
0x21bc7d0>, arg=(<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj
at remote 0x21ffbf0>, socket=<_socketobject at remote 0x21f7520>,
encoding=None, server_address=('0.0.0.0', 21000), logRequests=False,
allow_dotted_names=False, instance=<InfoProvider() at remote 0x221e518>,
allow_none=True, _BaseServer__serving=True,
_BaseServer__is_shut_down=<_Event(_Verbose__verbose=False,
_Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False,
_Condition__lock=<thread.lock at remote 0x7ff83194b1e0>, acquire=<built-in
method acquire of thread.lock object at remote 0x7ff83194b1e0>,
_Condition__waiters=[], release=<built-in method release of thread.lock
object at remote 0x7ff83194b1e0>) at remote 0x2206990>) at remote
0x2206890>) at remote 0x21f1518>,), kw=0x0) at ../Objects/classobject.c:2579
#8  0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote
0x20dde10>, arg=<unknown at remote 0x7ff8118e3850>, kw=<unknown at remote
0x7ff8118e37d0>) at ../Objects/abstract.c:2492
#9  0x00000000004a1b03 in PyEval_CallObjectWithKeywords
(func=<instancemethod at remote 0x20dde10>, arg=(), kw=<unknown at remote
0x7ff8118e37d0>) at ../Python/ceval.c:3619
#10 0x00000000004d7d3d in t_bootstrap (boot_raw=0x21dd9f0) at
../Modules/threadmodule.c:425
#11 0x00007ff8316309ca in start_thread (arg=<value optimized out>) at
pthread_create.c:300
#12 0x00007ff83050a70d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#13 0x0000000000000000 in ?? ()

Thread 4 (Thread 0x7ff8102b8710 (LWP 32499)):
#0  0x00007ff830502ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007ff810394e2e in ?? () from /usr/lib/libtcl8.5.so.0
#2  0x00007ff8316309ca in start_thread (arg=<value optimized out>) at
pthread_create.c:300
#3  0x00007ff83050a70d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#4  0x0000000000000000 in ?? ()

Thread 3 (Thread 0x7ff80e1ef710 (LWP 32500)):
#0  0x00007ff8304cdfbd in __libc_waitpid (pid=32503, stat_loc=<value
optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007ff8304657e9 in do_system (line=<value optimized out>) at
../sysdeps/posix/system.c:149
#2  0x00007ff830465b20 in __libc_system (line=<value optimized out>) at
../sysdeps/posix/system.c:190
#3  0x00007ff82fa7a353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007ff830457a75 in *__GI_raise (sig=<value optimized out>) at
../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007ff83045b5c0 in *__GI_abort () at abort.c:92
#7  0x00007ff830450941 in *__GI___assert_fail (assertion=0x7ff82a968be4 "px
!= 0", file=<value optimized out>, line=418, function=0x7ff82a98ac20 "T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]") at assert.c:81
#8  0x00007ff82a726867 in boost::shared_ptr<Interaction>::operator->
(this=0x1a84d30) at /usr/include/boost/smart_ptr/shared_ptr.hpp:418
#9  0x00007ff82a6c6593 in InteractionContainer::requestErase
(this=0x1a84d00, id1=52, id2=73, force=true) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:87
#10 0x00007ff8190dc8c4 in InteractionLoop::action
(.omp_data_i=0x7ff80e1ee7e0) at
/home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:77
#11 0x00007ff8190ccb21 in InteractionLoop::action (this=0x2cfbb80) at
/home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:63
#12 0x00007ff82a6c8b3e in Scene::moveToNextTimeStep (this=0x1a8ae90) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/Scene.cpp:92
#13 0x00007ff82a6cf8de in SimulationFlow::singleAction (this=0x1a0cb10) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/SimulationFlow.cpp:20
#14 0x00007ff82a6d10f8 in ThreadWorker::callSingleAction (this=0x1a0cb10) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadWorker.cpp:71
#15 0x00007ff82a6d05eb in ThreadRunner::call (this=0x1a8e2e0) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:53
#16 0x00007ff82a6d031d in ThreadRunner::run (this=0x1a8e2e0) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:27
#17 0x00007ff82a79c1e9 in boost::_mfi::mf0<void, ThreadRunner>::operator()
(this=0x2eca9d0, p=0x1a8e2e0) at
/usr/include/boost/bind/mem_fn_template.hpp:49
#18 0x00007ff82a78d504 in boost::_bi::list1<boost::_bi::value<ThreadRunner*>
>::operator()<boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list0>
(this=0x2eca9e0, f=..., a=...) at /usr/include/boost/bind/bind.hpp:246
#19 0x00007ff82a779d7b in boost::_bi::bind_t<void, boost::_mfi::mf0<void,
ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> >
>::operator() (this=0x2eca9d0) at
/usr/include/boost/bind/bind_template.hpp:20
#20 0x00007ff82a766532 in
boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<void,
boost::_mfi::mf0<void, ThreadRunner>,
boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >, void>::invoke
(function_obj_ptr=...) at
/usr/include/boost/function/function_template.hpp:153
#21 0x00007ff82a837895 in boost::function0<void>::operator()
(this=0x2eca9c8) at /usr/include/boost/function/function_template.hpp:1013
#22 0x00007ff82a81044a in boost::detail::thread_data<boost::function0<void>
>::run (this=0x2eca8c0) at /usr/include/boost/thread/detail/thread.hpp:56
#23 0x00007ff82f19cb70 in thread_proxy () from
/usr/lib/libboost_thread.so.1.40.0
#24 0x00007ff8316309ca in start_thread (arg=<value optimized out>) at
pthread_create.c:300
#25 0x00007ff83050a70d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#26 0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7ff80d9ee710 (LWP 32501)):
#0  0x00007ff8304cdfbd in __libc_waitpid (pid=32502, stat_loc=<value
optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007ff8304657e9 in do_system (line=<value optimized out>) at
../sysdeps/posix/system.c:149
#2  0x00007ff830465b20 in __libc_system (line=<value optimized out>) at
../sysdeps/posix/system.c:190
#3  0x00007ff82fa7a353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007ff830457a75 in *__GI_raise (sig=<value optimized out>) at
../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007ff83045b5c0 in *__GI_abort () at abort.c:92
#7  0x00007ff830450941 in *__GI___assert_fail (assertion=0x7ff82a968be4 "px
!= 0", file=<value optimized out>, line=418, function=0x7ff82a98ac20 "T*
boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T =
Interaction]") at assert.c:81
#8  0x00007ff82a726867 in boost::shared_ptr<Interaction>::operator->
(this=0x1a84d30) at /usr/include/boost/smart_ptr/shared_ptr.hpp:418
#9  0x00007ff82a6c6593 in InteractionContainer::requestErase
(this=0x1a84d00, id1=1, id2=0, force=true) at
/home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:87
#10 0x00007ff8190dc8c4 in InteractionLoop::action
(.omp_data_i=0x7ff80e1ee7e0) at
/home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InteractionLoop.cpp:77
#11 0x00007ff82ab7fa02 in ?? () from /usr/lib/libgomp.so.1
#12 0x00007ff8316309ca in start_thread (arg=<value optimized out>) at
pthread_create.c:300
#13 0x00007ff83050a70d in clone () at
../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#14 0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7ff831a31700 (LWP 32494)):
#0  0x00007ff83163911d in nanosleep () at
../sysdeps/unix/syscall-template.S:82
#1  0x00007ff815e11740 in pyOmega::wait (this=0x7ff8318cc8e0) at
py/wrapper/yadeWrapper.cpp:365
#2  0x00007ff815f14093 in boost::python::detail::invoke<int, void
(pyOmega::*)(), boost::python::arg_from_python<pyOmega&> > (f=@0x1ae9ec8,
tc=...) at /usr/include/boost/python/detail/invoke.hpp:94
#3  0x00007ff815ef21f1 in boost::python::detail::caller_arity<1u>::impl<void
(pyOmega::*)(), boost::python::default_call_policies,
boost::mpl::vector2<void, pyOmega&> >::operator() (this=0x1ae9ec8,
args_=(<Omega at remote 0x7ff8318cc8a0>,)) at
/usr/include/boost/python/detail/caller.hpp:223
#4  0x00007ff815ed67df in
boost::python::objects::caller_py_function_impl<boost::python::detail::caller<void
(pyOmega::*)(), boost::python::default_call_policies,
boost::mpl::vector2<void, pyOmega&> > >::operator() (this=0x1ae9ec0,
args=(<Omega at remote 0x7ff8318cc8a0>,), kw=0x0) at
/usr/include/boost/python/object/py_function.hpp:38
#5  0x00007ff82e189c2e in boost::python::objects::function::call(_object*,
_object*) const () from /usr/lib/libboost_python-py26.so.1.40.0
#6  0x00007ff82e189ed8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#7  0x00007ff82e19154b in
boost::python::handle_exception_impl(boost::function0<void>) () from
/usr/lib/libboost_python-py26.so.1.40.0
#8  0x00007ff82e1867d8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#9  0x000000000041f0c7 in PyObject_Call (func=<Boost.Python.function at
remote 0x1ae9ee0>, arg=<unknown at remote 0x7fff14b10570>, kw=<unknown at
remote 0x7fff14b10570>) at ../Objects/abstract.c:2492
#10 0x00000000004a7378 in do_call (f=Frame 0x22a6020, for file
testScript.py, line 92, in <module> (), throwflag=<value optimized out>) at
../Python/ceval.c:3968
#11 call_function (f=Frame 0x22a6020, for file testScript.py, line 92, in
<module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3773
#12 PyEval_EvalFrameEx (f=Frame 0x22a6020, for file testScript.py, line 92,
in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#13 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x21f55d0, globals=<value
optimized out>, locals=<value optimized out>, args=0x0, argcount=<value
optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0,
closure=0x0) at ../Python/ceval.c:3000
#14 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff14b10580,
globals=<unknown at remote 0x7fff14b10570>, locals=<unknown at remote
0x7fff14b10570>) at ../Python/ceval.c:541
#15 0x00000000004c9a0e in run_mod (fp=<value optimized out>,
filename=0x7ff831967b7c "testScript.py", start=<value optimized out>,
globals=<value optimized out>, locals=<value optimized out>, closeit=1,
flags=0x0) at ../Python/pythonrun.c:1339
#16 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7ff831967b7c
"testScript.py", start=<value optimized out>, globals=<value optimized out>,
locals=<value optimized out>, closeit=1, flags=0x0) at
../Python/pythonrun.c:1325
#17 0x00000000004a0c37 in builtin_execfile (self=<value optimized out>,
args=<value optimized out>) at ../Python/bltinmodule.c:794
#18 0x00000000004a7c5e in call_function (f=Frame 0x2255740, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 152, in
runScript (script='testScript.py'), throwflag=<value optimized out>) at
../Python/ceval.c:3750
#19 PyEval_EvalFrameEx (f=Frame 0x2255740, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 152, in
runScript (script='testScript.py'), throwflag=<value optimized out>) at
../Python/ceval.c:2412
#20 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ff831953288,
globals=<value optimized out>, locals=<value optimized out>, args=0x1,
argcount=<value optimized out>, kws=<value optimized out>, kwcount=0,
defs=0x0, defcount=0, closure=(<cell at remote 0x2200de0>, <cell at remote
0x2200e88>, <cell at remote 0x22070c0>)) at ../Python/ceval.c:3000
#21 0x00000000004a7809 in fast_function (f=Frame 0x2255280, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in
userSession (qt4=False, runScript=<function at remote 0x21f0488>),
throwflag=<value optimized out>) at ../Python/ceval.c:3846
#22 call_function (f=Frame 0x2255280, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in
userSession (qt4=False, runScript=<function at remote 0x21f0488>),
throwflag=<value optimized out>) at ../Python/ceval.c:3771
#23 PyEval_EvalFrameEx (f=Frame 0x2255280, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 167, in
userSession (qt4=False, runScript=<function at remote 0x21f0488>),
throwflag=<value optimized out>) at ../Python/ceval.c:2412
#24 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ff831953300,
globals=<value optimized out>, locals=<value optimized out>,
args=0x7ff8319595a0, argcount=<value optimized out>, kws=<value optimized
out>, kwcount=0, defs=0x7ff8318befa8, defcount=1, closure=0x0) at
../Python/ceval.c:3000
#25 0x00000000004a7809 in fast_function (f=Frame 0x196d350, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in
<module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#26 call_function (f=Frame 0x196d350, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in
<module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#27 PyEval_EvalFrameEx (f=Frame 0x196d350, for file
./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug, line 226, in
<module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#28 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7ff831953918,
globals=<value optimized out>, locals=<value optimized out>, args=0x0,
argcount=<value optimized out>, kws=<value optimized out>, kwcount=0,
defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#29 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff14b10580,
globals=<unknown at remote 0x7fff14b10570>, locals=<unknown at remote
0x7fff14b10570>) at ../Python/ceval.c:541
#30 0x00000000004c9a0e in run_mod (fp=<value optimized out>,
filename=0x7fff14b12f91
"./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value
optimized out>, globals=<value optimized out>, locals=<value optimized out>,
closeit=1, flags=0x7fff14b11410) at ../Python/pythonrun.c:1339
#31 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7fff14b12f91
"./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value
optimized out>, globals=<value optimized out>, locals=<value optimized out>,
closeit=1, flags=0x7fff14b11410) at ../Python/pythonrun.c:1325
#32 0x00000000004c9c24 in PyRun_SimpleFileExFlags (fp=<value optimized out>,
filename=0x7fff14b12f91
"./../../../../cleanCompDebug/build/bin/yade-cleanCompDebug", closeit=1,
flags=0x7fff14b11410) at ../Python/pythonrun.c:935
#33 0x000000000041a7ff in Py_Main (argc=831819904, argv=<value optimized
out>) at ../Modules/main.c:572
#34 0x00007ff830442c4d in __libc_start_main (main=<value optimized out>,
argc=<value optimized out>, ubp_av=<value optimized out>, init=<value
optimized out>, fini=<value optimized out>, rtld_fini=<value optimized out>,
stack_end=0x7fff14b11528) at libc-start.c:226
#35 0x00000000004199f9 in _start ()
Aborted

Revision history for this message

Václav Šmilauer (eudoxos) wrote on 2010-11-25:

#7

Now should be definitley fixed in r2570 (I tried yuor script). Let us keep this bug open, so that I remember I should add a simple test to the regression suite. Cheers, v.

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-11-25:

#8

Thanks a lot, Vaclav! All is Ok now.

Anton

Revision history for this message

Klaus Thoeni (klaus.thoeni) wrote on 2010-11-25: Re: [Yade-dev] [Bug 681018] Re: Crash in last revision

#9

Hi Guys!

I just had a try with the new version, and finally, it works fine for me as
well.

Thanks

Klaus

On Thu, Nov 25, 2010 at 10:15 AM, Anton Gladky <email address hidden>wrote:

> Thanks a lot, Vaclav! All is Ok now.
>
> Anton
>
> --
> Crash in last revision
> https://bugs.launchpad.net/bugs/681018
> You received this bug notification because you are a member of Yade
> developers, which is subscribed to Yade.
>
> Status in Yet Another Dynamic Engine: In Progress
>
> Bug description:
> The simulation starts and after couple seconds of simulation it crashes.
>
> The problem is in O.bodies.erase(i.id)
>
> Test script and backtrace are attached.
>
>
>
> _______________________________________________
> Mailing list: https://launchpad.net/~yade-dev<https://launchpad.net/%7Eyade-dev>
> Post to : <email address hidden>
> Unsubscribe : https://launchpad.net/~yade-dev<https://launchpad.net/%7Eyade-dev>
> More help : https://help.launchpad.net/ListHelp
>

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-12-01:

#10

Download full text (21.9 KiB)

With r2580, I get the following crash:

But the attached at first messge script does not give this error.

Vaclav, do you need the "crashing" script, or backtrace is enough?

Thank you

python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:44: bool
InteractionContainer::erase(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-ZOjnOf/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
[Thread debugging using libthread_db enabled]
[New Thread 0x7f1ad1c9e710 (LWP 4730)]
[New Thread 0x7f1ad9b84710 (LWP 4729)]
[New Thread 0x7f1aeaada710 (LWP 4727)]
[New Thread 0x7f1aeb2db710 (LWP 4725)]
0x00007f1b0adef11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82 ../sysdeps/unix/syscall-template.S: No such file or directory.
in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 5 (Thread 0x7f1aeb2db710 (LWP 4725)):
#0 0x00007f1b09cb8ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1 0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2 0x00000000004a7c5e in call_function (f=Frame 0x7f1ae4002cd0, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1d13830>, authenticated=[], socket=<_socketobject at remote 0x1ca0600>, server_address=('0.0.0.0', 9000), cookie='ykuasc', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b1021b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b1021b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b1021b0>) at remote 0x1cf5990>) at remote 0x1ca2710>) at remote 0x1cab7e8>, poll_interval=<float at remote 0x1a5c730>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3 PyEval_EvalFrameEx (f=Frame 0x7f1ae4002cd0, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1d13830>, authenticated=[], socket=<_socketobject at remote 0x1ca0600>, server_address=('0.0.0.0', 9000), cookie='ykuasc', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b1021b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b1021b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b1021b0>) at remote 0x1cf5990>) at...

With r2580, I get the following crash:

But the attached at first messge script does not give this error.

Vaclav, do you need the "crashing" script, or backtrace is enough?

Thank you

python: /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:44: bool 
 InteractionContainer::erase(int, int): Assertion `b1' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-ZOjnOf/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
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[Thread debugging using libthread_db enabled]
[New Thread 0x7f1ad1c9e710 (LWP 4730)]
[New Thread 0x7f1ad9b84710 (LWP 4729)]
[New Thread 0x7f1aeaada710 (LWP 4727)]
[New Thread 0x7f1aeb2db710 (LWP 4725)]
0x00007f1b0adef11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82	../sysdeps/unix/syscall-template.S: No such file or directory.
	in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 5 (Thread 0x7f1aeb2db710 (LWP 4725)):
#0  0x00007f1b09cb8ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x7f1ae4002cd0, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1d13830>, authenticated=[], socket=<_socketobject at remote 0x1ca0600>, server_address=('0.0.0.0', 9000), cookie='ykuasc', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b1021b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b1021b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b1021b0>) at remote 0x1cf5990>) at remote 0x1ca2710>) at remote 0x1cab7e8>, poll_interval=<float at remote 0x1a5c730>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x7f1ae4002cd0, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1d13830>, authenticated=[], socket=<_socketobject at remote 0x1ca0600>, server_address=('0.0.0.0', 9000), cookie='ykuasc', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b1021b0>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b1021b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b1021b0>) at remote 0x1cf5990>) at remote 0x1ca2710>) at remote 0x1cab7e8>, poll_interval=<float at remote 0x1a5c730>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1caee40, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x1ca2aa8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x00000000004a7809 in fast_function (f=Frame 0x7f1ae4002b10, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1c971e0>) at remote 0x1bd2a68>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#6  call_function (f=Frame 0x7f1ae4002b10, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1c971e0>) at remote 0x1bd2a68>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#7  PyEval_EvalFrameEx (f=Frame 0x7f1ae4002b10, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1c971e0>) at remote 0x1bd2a68>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#8  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1cae990, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#9  0x0000000000537620 in function_call (func=<function at remote 0x1cf8cf8>, arg=(<WorkerThread(func=<instancemethod at remote 0x1c971e0>) at remote 0x1bd2a68>,), kw=0x0) at ../Objects/funcobject.c:524
#10 0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x1cf8cf8>, arg=<unknown at remote 0x7f1aeb2da500>, kw=<unknown at remote 0x7f1aeb2da480>) at ../Objects/abstract.c:2492
#11 0x0000000000427dff in instancemethod_call (func=<function at remote 0x1cf8cf8>, arg=(<WorkerThread(func=<instancemethod at remote 0x1c971e0>) at remote 0x1bd2a68>,), kw=0x0) at ../Objects/classobject.c:2579
#12 0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x1c97230>, arg=<unknown at remote 0x7f1aeb2da500>, kw=<unknown at remote 0x7f1aeb2da480>) at ../Objects/abstract.c:2492
#13 0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x1c97230>, arg=(), kw=<unknown at remote 0x7f1aeb2da480>) at ../Python/ceval.c:3619
#14 0x00007f1aeb2e5d3b in ?? () from /usr/lib/pymodules/python2.6/sip.so
#15 0x00007f1aeb58d468 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#16 0x00007f1aeb5bd630 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#17 0x00007f1b06147775 in ?? () from /usr/lib/libQtCore.so.4
#18 0x00007f1b0ade69ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#19 0x00007f1b09cc070d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#20 0x0000000000000000 in ?? ()

Thread 4 (Thread 0x7f1aeaada710 (LWP 4727)):
#0  0x00007f1b09cb8ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x1e0e320, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x1d9e8f0>, socket=<_socketobject at remote 0x1d0bd70>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x1db15a8>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b102780>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b102780>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b102780>) at remote 0x1db5710>) at remote 0x1db5610>) at remote 0x1db1368>, poll_interval=<float at remote 0x1a5c730>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x1e0e320, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x1d9e8f0>, socket=<_socketobject at remote 0x1d0bd70>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x1db15a8>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0x7f1b0b102780>, acquire=<built-in method acquire of thread.lock object at remote 0x7f1b0b102780>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0x7f1b0b102780>) at remote 0x1db5710>) at remote 0x1db5610>) at remote 0x1db1368>, poll_interval=<float at remote 0x1a5c730>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1caee40, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x1ca2aa8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x00000000004a7809 in fast_function (f=Frame 0x1e09540, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1bc0eb0>) at remote 0x1dc4050>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#6  call_function (f=Frame 0x1e09540, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1bc0eb0>) at remote 0x1dc4050>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#7  PyEval_EvalFrameEx (f=Frame 0x1e09540, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1bc0eb0>) at remote 0x1dc4050>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#8  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1cae990, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#9  0x0000000000537620 in function_call (func=<function at remote 0x1d1a6e0>, arg=(<WorkerThread(func=<instancemethod at remote 0x1bc0eb0>) at remote 0x1dc4050>,), kw=0x0) at ../Objects/funcobject.c:524
#10 0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x1d1a6e0>, arg=<unknown at remote 0x7f1aeaad9500>, kw=<unknown at remote 0x7f1aeaad9480>) at ../Objects/abstract.c:2492
#11 0x0000000000427dff in instancemethod_call (func=<function at remote 0x1d1a6e0>, arg=(<WorkerThread(func=<instancemethod at remote 0x1bc0eb0>) at remote 0x1dc4050>,), kw=0x0) at ../Objects/classobject.c:2579
#12 0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x1c97190>, arg=<unknown at remote 0x7f1aeaad9500>, kw=<unknown at remote 0x7f1aeaad9480>) at ../Objects/abstract.c:2492
#13 0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x1c97190>, arg=(), kw=<unknown at remote 0x7f1aeaad9480>) at ../Python/ceval.c:3619
#14 0x00007f1aeb2e5d3b in ?? () from /usr/lib/pymodules/python2.6/sip.so
#15 0x00007f1aeb58d468 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#16 0x00007f1aeb5bd630 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#17 0x00007f1b06147775 in ?? () from /usr/lib/libQtCore.so.4
#18 0x00007f1b0ade69ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#19 0x00007f1b09cc070d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#20 0x0000000000000000 in ?? ()

Thread 3 (Thread 0x7f1ad9b84710 (LWP 4729)):
#0  0x00007f1b09cb8ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007f1ad9c60e2e in ?? () from /usr/lib/libtcl8.5.so.0
#2  0x00007f1b0ade69ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#3  0x00007f1b09cc070d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#4  0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7f1ad1c9e710 (LWP 4730)):
#0  0x00007f1b09c83fbd in __libc_waitpid (pid=20358, stat_loc=<value optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007f1b09c1b7e9 in do_system (line=<value optimized out>) at ../sysdeps/posix/system.c:149
#2  0x00007f1b09c1bb20 in __libc_system (line=<value optimized out>) at ../sysdeps/posix/system.c:190
#3  0x00007f1b0b091353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007f1b09c0da75 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007f1b09c115c0 in *__GI_abort () at abort.c:92
#7  0x00007f1b09c06941 in *__GI___assert_fail (assertion=0x7f1b041576b1 "b1", file=<value optimized out>, line=44, function=0x7f1b04197ce0 "bool InteractionContainer::erase(int, int)") at assert.c:81
#8  0x00007f1b03eb918d in InteractionContainer::erase (this=0x14302c0, id1=5271, id2=34763) at /home/gladk/dem/yade/cleanCompDebug/yade/core/InteractionContainer.cpp:44
#9  0x00007f1af23fba16 in InteractionContainer::erasePending<InsertionSortCollider> (this=0x14302c0, t=..., rb=0x14334e0) at /home/gladk/dem/yade/cleanCompDebug/build-cleanCompDebug/dbg/include/yade/core/InteractionContainer.hpp:146
#10 0x00007f1af23eccc2 in InsertionSortCollider::action (this=0x7c6a510) at /home/gladk/dem/yade/cleanCompDebug/yade/pkg/common/InsertionSortCollider.cpp:242
#11 0x00007f1b03ebbffb in Scene::moveToNextTimeStep (this=0x14334e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/Scene.cpp:92
#12 0x00007f1b03ec2d9e in SimulationFlow::singleAction (this=0x13880c0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/SimulationFlow.cpp:20
#13 0x00007f1b03ec45b8 in ThreadWorker::callSingleAction (this=0x13880c0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadWorker.cpp:71
#14 0x00007f1b03ec3aab in ThreadRunner::call (this=0x14366e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:53
#15 0x00007f1b03ec37dd in ThreadRunner::run (this=0x14366e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:27
#16 0x00007f1b03f8d6d5 in boost::_mfi::mf0<void, ThreadRunner>::operator() (this=0x3399cd0, p=0x14366e0) at /usr/include/boost/bind/mem_fn_template.hpp:49
#17 0x00007f1b03f7ec6e in boost::_bi::list1<boost::_bi::value<ThreadRunner*> >::operator()<boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list0> (this=0x3399ce0, f=..., a=...) at /usr/include/boost/bind/bind.hpp:246
#18 0x00007f1b03f6b635 in boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >::operator() (this=0x3399cd0) at /usr/include/boost/bind/bind_template.hpp:20
#19 0x00007f1b03f57fba in boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >, void>::invoke (function_obj_ptr=...) at /usr/include/boost/function/function_template.hpp:153
#20 0x00007f1b04027bff in boost::function0<void>::operator() (this=0x3399cc8) at /usr/include/boost/function/function_template.hpp:1013
#21 0x00007f1b04000f84 in boost::detail::thread_data<boost::function0<void> >::run (this=0x3399bc0) at /usr/include/boost/thread/detail/thread.hpp:56
#22 0x00007f1b0898ab70 in thread_proxy () from /usr/lib/libboost_thread.so.1.40.0
#23 0x00007f1b0ade69ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#24 0x00007f1b09cc070d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#25 0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7f1b0b1e7700 (LWP 4722)):
#0  0x00007f1b0adef11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007f1aef4eb4f8 in pyOmega::wait (this=0x13069c0) at py/wrapper/yadeWrapper.cpp:366
#2  0x00007f1aef5ebbc5 in boost::python::detail::invoke<int, void (pyOmega::*)(), boost::python::arg_from_python<pyOmega&> > (f=@0x1492bd8, tc=...) at /usr/include/boost/python/detail/invoke.hpp:94
#3  0x00007f1aef5ca22b in boost::python::detail::caller_arity<1u>::impl<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> >::operator() (this=0x1492bd8, args_=(<Omega at remote 0x1306980>,)) at /usr/include/boost/python/detail/caller.hpp:223
#4  0x00007f1aef5aefe9 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> > >::operator() (this=0x1492bd0, args=(<Omega at remote 0x1306980>,), kw=0x0) at /usr/include/boost/python/object/py_function.hpp:38
#5  0x00007f1b07977c2e in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/libboost_python-py26.so.1.40.0
#6  0x00007f1b07977ed8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#7  0x00007f1b0797f54b in boost::python::handle_exception_impl(boost::function0<void>) () from /usr/lib/libboost_python-py26.so.1.40.0
#8  0x00007f1b079747d8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#9  0x000000000041f0c7 in PyObject_Call (func=<Boost.Python.function at remote 0x1492bf0>, arg=<unknown at remote 0x7fff314b8b10>, kw=<unknown at remote 0x7fff314b8b10>) at ../Objects/abstract.c:2492
#10 0x00000000004a7378 in do_call (f=Frame 0x33b2690, for file SiebMaschine.py, line 167, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3968
#11 call_function (f=Frame 0x33b2690, for file SiebMaschine.py, line 167, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3773
#12 PyEval_EvalFrameEx (f=Frame 0x33b2690, for file SiebMaschine.py, line 167, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#13 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x2d50288, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#14 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff314b8b20, globals=<unknown at remote 0x7fff314b8b10>, locals=<unknown at remote 0x7fff314b8b10>) at ../Python/ceval.c:541
#15 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0x7f1b0b11dde4 "SiebMaschine.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1339
#16 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7f1b0b11dde4 "SiebMaschine.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1325
#17 0x00000000004a0c37 in builtin_execfile (self=<value optimized out>, args=<value optimized out>) at ../Python/bltinmodule.c:794
#18 0x00000000004a7c5e in call_function (f=Frame 0x339e480, for file ./../../bin/yade-cleanCompDebug, line 162, in runScript (script='SiebMaschine.py'), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#19 PyEval_EvalFrameEx (f=Frame 0x339e480, for file ./../../bin/yade-cleanCompDebug, line 162, in runScript (script='SiebMaschine.py'), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#20 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7f1b0b10a288, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=(<cell at remote 0x1f0bef8>, <cell at remote 0x1f0bf30>, <cell at remote 0x2010520>)) at ../Python/ceval.c:3000
#21 0x00000000004a7809 in fast_function (f=Frame 0x2221530, for file ./../../bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x2d501b8>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#22 call_function (f=Frame 0x2221530, for file ./../../bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x2d501b8>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#23 PyEval_EvalFrameEx (f=Frame 0x2221530, for file ./../../bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x2d501b8>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#24 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7f1b0b10a300, globals=<value optimized out>, locals=<value optimized out>, args=0x7f1b0b111330, argcount=<value optimized out>, kws=<value optimized out>, kwcount=1, defs=0x130d5a8, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#25 0x00000000004a7809 in fast_function (f=Frame 0x129ff80, for file ./../../bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#26 call_function (f=Frame 0x129ff80, for file ./../../bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#27 PyEval_EvalFrameEx (f=Frame 0x129ff80, for file ./../../bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#28 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x7f1b0b10a918, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#29 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff314b8b20, globals=<unknown at remote 0x7fff314b8b10>, locals=<unknown at remote 0x7fff314b8b10>) at ../Python/ceval.c:541
#30 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0x7fff314bbcad "./../../bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7fff314b99b0) at ../Python/pythonrun.c:1339
#31 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7fff314bbcad "./../../bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7fff314b99b0) at ../Python/pythonrun.c:1325
#32 0x00000000004c9c24 in PyRun_SimpleFileExFlags (fp=<value optimized out>, filename=0x7fff314bbcad "./../../bin/yade-cleanCompDebug", closeit=1, flags=0x7fff314b99b0) at ../Python/pythonrun.c:935
#33 0x000000000041a7ff in Py_Main (argc=185593984, argv=<value optimized out>) at ../Modules/main.c:572
#34 0x00007f1b09bf8c4d in __libc_start_main (main=<value optimized out>, argc=<value optimized out>, ubp_av=<value optimized out>, init=<value optimized out>, fini=<value optimized out>, rtld_fini=<value optimized out>, stack_end=0x7fff314b9ac8) at libc-start.c:226
#35 0x00000000004199f9 in _start ()
Aborted

Revision history for this message

Václav Šmilauer (eudoxos) wrote on 2010-12-01:

#11

r2581 should fix that (reopen if not).

Changed in yade:
status:	In Progress → Fix Released

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-12-01: Re: [Bug 681018] Re: Crash in last revision

#12

Thanks a lot, Vaclav! All is ok now.

Is 0.60 branch affected by this bug?

Anton

2010/12/1 Václav Šmilauer <email address hidden>

> r2581 should fix that (reopen if not).
>
> ** Changed in: yade
> Status: In Progress => Fix Released
>
> --
> Crash in last revision
> https://bugs.launchpad.net/bugs/681018
> You received this bug notification because you are a direct subscriber
> of the bug.
>
> Status in Yet Another Dynamic Engine: Fix Released
>
> Bug description:
> The simulation starts and after couple seconds of simulation it crashes.
>
> The problem is in O.bodies.erase(i.id)
>
> Test script and backtrace are attached.
>
> To unsubscribe from this bug, go to:
> https://bugs.launchpad.net/yade/+bug/681018/+subscribe
>

Revision history for this message

Václav Šmilauer (eudoxos) wrote on 2010-12-01:

#13

no, it is post-0.60

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-12-02:

#14

Download full text (22.5 KiB)

Sorry, Vaclav, again the crash.

Welcome to Yade bzr2582 (debug build)
TCP python prompt on localhost:9000, auth cookie `yasdes'
XMLRPC info provider on http://localhost:21000
Running script SiebMaschine.py
Vector3(0,-0.08715574274765818,0.99619469809174555)
Added 6552 particles
Total number of elements is 9630
python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T* boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T = Body]: Assertion `px != 0' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-u7LsRX/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
[Thread debugging using libthread_db enabled]
[New Thread 0x7f7278753710 (LWP 11820)]
[New Thread 0x7f7278f54710 (LWP 11812)]
[New Thread 0x7f7280d39710 (LWP 11791)]
[New Thread 0x7f7291c5d710 (LWP 11790)]
[New Thread 0x7f729245e710 (LWP 11789)]
0x00007f72b1f4b11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82 ../sysdeps/unix/syscall-template.S: No such file or directory.
in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7f729245e710 (LWP 11789)):
#0 0x00007f72b0e14ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1 0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2 0x00000000004a7c5e in call_function (f=Frame 0x7f728c003f50, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1598950>, authenticated=[], socket=<_socketobject at remote 0x15207c0>, server_address=('0.0.0.0', 9000), cookie='yasdes', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa721b0>, acquire=<built-in method acquire of thread.lock object at remote 0xa721b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xa721b0>) at remote 0x157c950>) at remote 0x15286d0>) at remote 0x1526638>, poll_interval=<float at remote 0x12e22b0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3 PyEval_EvalFrameEx (f=Frame 0x7f728c003f50, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1598950>, authenticated=[], socket=<_socketobject at remote 0x15207c0>, server_address=('0.0.0.0', 9000), cookie='yasdes', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa721b0>, acquire=<built-in method acquire of thread.lo...

Sorry, Vaclav, again the crash.

Welcome to Yade bzr2582 (debug build)
TCP python prompt on localhost:9000, auth cookie `yasdes'
XMLRPC info provider on http://localhost:21000
Running script SiebMaschine.py
Vector3(0,-0.08715574274765818,0.99619469809174555)
Added 6552 particles
Total number of elements is 9630
python: /usr/include/boost/smart_ptr/shared_ptr.hpp:418: T* boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T = Body]: Assertion `px != 0' failed.
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-u7LsRX/tmp-0'
GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>.
[Thread debugging using libthread_db enabled]
[New Thread 0x7f7278753710 (LWP 11820)]
[New Thread 0x7f7278f54710 (LWP 11812)]
[New Thread 0x7f7280d39710 (LWP 11791)]
[New Thread 0x7f7291c5d710 (LWP 11790)]
[New Thread 0x7f729245e710 (LWP 11789)]
0x00007f72b1f4b11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
82	../sysdeps/unix/syscall-template.S: No such file or directory.
	in ../sysdeps/unix/syscall-template.S
No symbol "info" in current context.

Thread 6 (Thread 0x7f729245e710 (LWP 11789)):
#0  0x00007f72b0e14ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x7f728c003f50, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1598950>, authenticated=[], socket=<_socketobject at remote 0x15207c0>, server_address=('0.0.0.0', 9000), cookie='yasdes', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa721b0>, acquire=<built-in method acquire of thread.lock object at remote 0xa721b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xa721b0>) at remote 0x157c950>) at remote 0x15286d0>) at remote 0x1526638>, poll_interval=<float at remote 0x12e22b0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x7f728c003f50, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<ThreadingTCPServer(RequestHandlerClass=<classobj at remote 0x1598950>, authenticated=[], socket=<_socketobject at remote 0x15207c0>, server_address=('0.0.0.0', 9000), cookie='yasdes', _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa721b0>, acquire=<built-in method acquire of thread.lock object at remote 0xa721b0>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xa721b0>) at remote 0x157c950>) at remote 0x15286d0>) at remote 0x1526638>, poll_interval=<float at remote 0x12e22b0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1534e40, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x1528a68, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x00000000004a7809 in fast_function (f=Frame 0x7f728c003d90, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x151c1e0>) at remote 0x152b9e0>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#6  call_function (f=Frame 0x7f728c003d90, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x151c1e0>) at remote 0x152b9e0>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#7  PyEval_EvalFrameEx (f=Frame 0x7f728c003d90, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x151c1e0>) at remote 0x152b9e0>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#8  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1534990, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#9  0x0000000000537620 in function_call (func=<function at remote 0x157fcf8>, arg=(<WorkerThread(func=<instancemethod at remote 0x151c1e0>) at remote 0x152b9e0>,), kw=0x0) at ../Objects/funcobject.c:524
#10 0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x157fcf8>, arg=<unknown at remote 0x7f729245d500>, kw=<unknown at remote 0x7f729245d480>) at ../Objects/abstract.c:2492
#11 0x0000000000427dff in instancemethod_call (func=<function at remote 0x157fcf8>, arg=(<WorkerThread(func=<instancemethod at remote 0x151c1e0>) at remote 0x152b9e0>,), kw=0x0) at ../Objects/classobject.c:2579
#12 0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x151c230>, arg=<unknown at remote 0x7f729245d500>, kw=<unknown at remote 0x7f729245d480>) at ../Objects/abstract.c:2492
#13 0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x151c230>, arg=(), kw=<unknown at remote 0x7f729245d480>) at ../Python/ceval.c:3619
#14 0x00007f7292468d3b in ?? () from /usr/lib/pymodules/python2.6/sip.so
#15 0x00007f7292710468 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#16 0x00007f7292740630 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#17 0x00007f72ad2d1775 in ?? () from /usr/lib/libQtCore.so.4
#18 0x00007f72b1f429ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#19 0x00007f72b0e1c70d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#20 0x0000000000000000 in ?? ()

Thread 5 (Thread 0x7f7291c5d710 (LWP 11790)):
#0  0x00007f72b0e14ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00000000004f7013 in select_select (self=<value optimized out>, args=<value optimized out>) at ../Modules/selectmodule.c:278
#2  0x00000000004a7c5e in call_function (f=Frame 0x154a180, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x161da10>, socket=<_socketobject at remote 0x158df30>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x163a3f8>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa72780>, acquire=<built-in method acquire of thread.lock object at remote 0xa72780>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xa72780>) at remote 0x163b6d0>) at remote 0x163b5d0>) at remote 0x163a1b8>, poll_interval=<float at remote 0x12e22b0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#3  PyEval_EvalFrameEx (f=Frame 0x154a180, for file /usr/lib/python2.6/SocketServer.py, line 224, in serve_forever (self=<SimpleXMLRPCServer(funcs={}, RequestHandlerClass=<classobj at remote 0x161da10>, socket=<_socketobject at remote 0x158df30>, encoding=None, server_address=('0.0.0.0', 21000), logRequests=False, allow_dotted_names=False, instance=<InfoProvider() at remote 0x163a3f8>, allow_none=True, _BaseServer__serving=True, _BaseServer__is_shut_down=<_Event(_Verbose__verbose=False, _Event__flag=False, _Event__cond=<_Condition(_Verbose__verbose=False, _Condition__lock=<thread.lock at remote 0xa72780>, acquire=<built-in method acquire of thread.lock object at remote 0xa72780>, _Condition__waiters=[], release=<built-in method release of thread.lock object at remote 0xa72780>) at remote 0x163b6d0>) at remote 0x163b5d0>) at remote 0x163a1b8>, poll_interval=<float at remote 0x12e22b0>, r=[], w=[], e=[]), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#4  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1534e40, globals=<value optimized out>, locals=<value optimized out>, args=0x2, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x1528a68, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#5  0x00000000004a7809 in fast_function (f=Frame 0x1691870, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1446eb0>) at remote 0x152bf30>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#6  call_function (f=Frame 0x1691870, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1446eb0>) at remote 0x152bf30>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#7  PyEval_EvalFrameEx (f=Frame 0x1691870, for file /home/gladk/dem/yade/cleanCompDebug/build/lib/yade-cleanCompDebug/dbg/py/yade/remote.py, line 121, in run (self=<WorkerThread(func=<instancemethod at remote 0x1446eb0>) at remote 0x152bf30>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#8  0x00000000004a9671 in PyEval_EvalCodeEx (co=0x1534990, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#9  0x0000000000537620 in function_call (func=<function at remote 0x15a16e0>, arg=(<WorkerThread(func=<instancemethod at remote 0x1446eb0>) at remote 0x152bf30>,), kw=0x0) at ../Objects/funcobject.c:524
#10 0x000000000041f0c7 in PyObject_Call (func=<function at remote 0x15a16e0>, arg=<unknown at remote 0x7f7291c5c500>, kw=<unknown at remote 0x7f7291c5c480>) at ../Objects/abstract.c:2492
#11 0x0000000000427dff in instancemethod_call (func=<function at remote 0x15a16e0>, arg=(<WorkerThread(func=<instancemethod at remote 0x1446eb0>) at remote 0x152bf30>,), kw=0x0) at ../Objects/classobject.c:2579
#12 0x000000000041f0c7 in PyObject_Call (func=<instancemethod at remote 0x151c190>, arg=<unknown at remote 0x7f7291c5c500>, kw=<unknown at remote 0x7f7291c5c480>) at ../Objects/abstract.c:2492
#13 0x00000000004a1b03 in PyEval_CallObjectWithKeywords (func=<instancemethod at remote 0x151c190>, arg=(), kw=<unknown at remote 0x7f7291c5c480>) at ../Python/ceval.c:3619
#14 0x00007f7292468d3b in ?? () from /usr/lib/pymodules/python2.6/sip.so
#15 0x00007f7292710468 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#16 0x00007f7292740630 in ?? () from /usr/lib/pymodules/python2.6/PyQt4/QtCore.so
#17 0x00007f72ad2d1775 in ?? () from /usr/lib/libQtCore.so.4
#18 0x00007f72b1f429ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#19 0x00007f72b0e1c70d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#20 0x0000000000000000 in ?? ()

Thread 4 (Thread 0x7f7280d39710 (LWP 11791)):
#0  0x00007f72b0e14ff3 in select () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007f7280e15e2e in ?? () from /usr/lib/libtcl8.5.so.0
#2  0x00007f72b1f429ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#3  0x00007f72b0e1c70d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#4  0x0000000000000000 in ?? ()

Thread 3 (Thread 0x7f7278f54710 (LWP 11812)):
#0  0x00007f72b0ddffbd in __libc_waitpid (pid=18325, stat_loc=<value optimized out>, options=0) at ../sysdeps/unix/sysv/linux/waitpid.c:41
#1  0x00007f72b0d777e9 in do_system (line=<value optimized out>) at ../sysdeps/posix/system.c:149
#2  0x00007f72b0d77b20 in __libc_system (line=<value optimized out>) at ../sysdeps/posix/system.c:190
#3  0x00007f72b2235353 in crashHandler (sig=6) at core/main/pyboot.cpp:45
#4  <signal handler called>
#5  0x00007f72b0d69a75 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#6  0x00007f72b0d6d5c0 in *__GI_abort () at abort.c:92
#7  0x00007f72b0d62941 in *__GI___assert_fail (assertion=0x7f729a29e934 "px != 0", file=<value optimized out>, line=418, function=0x7f729a2a3580 "T* boost::shared_ptr< <template-parameter-1-1> >::operator->() const [with T = Body]") at assert.c:81
#8  0x00007f7298f2cc33 in boost::shared_ptr<Body>::operator-> (this=0x44fbbf0) at /usr/include/boost/smart_ptr/shared_ptr.hpp:418
#9  0x00007f7299753819 in VTKRecorder::action (this=0x480e0d0) at /home/gladk/dem/yade/cleanCompDebug/yade/pkg/dem/VTKRecorder.cpp:205
#10 0x00007f72ab045fc9 in Scene::moveToNextTimeStep (this=0xcb95d0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/Scene.cpp:92
#11 0x00007f72ab04cd6c in SimulationFlow::singleAction (this=0xc0a2e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/SimulationFlow.cpp:20
#12 0x00007f72ab04e586 in ThreadWorker::callSingleAction (this=0xc0a2e0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadWorker.cpp:71
#13 0x00007f72ab04da79 in ThreadRunner::call (this=0xcbc8b0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:53
#14 0x00007f72ab04d7ab in ThreadRunner::run (this=0xcbc8b0) at /home/gladk/dem/yade/cleanCompDebug/yade/core/ThreadRunner.cpp:27
#15 0x00007f72ab1176a3 in boost::_mfi::mf0<void, ThreadRunner>::operator() (this=0x4810bd0, p=0xcbc8b0) at /usr/include/boost/bind/mem_fn_template.hpp:49
#16 0x00007f72ab108c3c in boost::_bi::list1<boost::_bi::value<ThreadRunner*> >::operator()<boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list0> (this=0x4810be0, f=..., a=...) at /usr/include/boost/bind/bind.hpp:246
#17 0x00007f72ab0f5603 in boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >::operator() (this=0x4810bd0) at /usr/include/boost/bind/bind_template.hpp:20
#18 0x00007f72ab0e1f88 in boost::detail::function::void_function_obj_invoker0<boost::_bi::bind_t<void, boost::_mfi::mf0<void, ThreadRunner>, boost::_bi::list1<boost::_bi::value<ThreadRunner*> > >, void>::invoke (function_obj_ptr=...) at /usr/include/boost/function/function_template.hpp:153
#19 0x00007f72ab1b1bcd in boost::function0<void>::operator() (this=0x4810bc8) at /usr/include/boost/function/function_template.hpp:1013
#20 0x00007f72ab18af52 in boost::detail::thread_data<boost::function0<void> >::run (this=0x4810ac0) at /usr/include/boost/thread/detail/thread.hpp:56
#21 0x00007f72afb14b70 in thread_proxy () from /usr/lib/libboost_thread.so.1.40.0
#22 0x00007f72b1f429ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#23 0x00007f72b0e1c70d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#24 0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7f7278753710 (LWP 11820)):
#0  0x00007f72ab4f916a in ?? () from /usr/lib/libgomp.so.1
#1  0x00007f72ab4f7a16 in ?? () from /usr/lib/libgomp.so.1
#2  0x00007f72b1f429ca in start_thread (arg=<value optimized out>) at pthread_create.c:300
#3  0x00007f72b0e1c70d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:112
#4  0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7f72b2343700 (LWP 11786)):
#0  0x00007f72b1f4b11d in nanosleep () at ../sysdeps/unix/syscall-template.S:82
#1  0x00007f7296670b7a in pyOmega::wait (this=0xb68c60) at py/wrapper/yadeWrapper.cpp:366
#2  0x00007f7296771c19 in boost::python::detail::invoke<int, void (pyOmega::*)(), boost::python::arg_from_python<pyOmega&> > (f=@0xd18da8, tc=...) at /usr/include/boost/python/detail/invoke.hpp:94
#3  0x00007f729674ffc1 in boost::python::detail::caller_arity<1u>::impl<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> >::operator() (this=0xd18da8, args_=(<Omega at remote 0xb68c20>,)) at /usr/include/boost/python/detail/caller.hpp:223
#4  0x00007f7296734ba3 in boost::python::objects::caller_py_function_impl<boost::python::detail::caller<void (pyOmega::*)(), boost::python::default_call_policies, boost::mpl::vector2<void, pyOmega&> > >::operator() (this=0xd18da0, args=(<Omega at remote 0xb68c20>,), kw=0x0) at /usr/include/boost/python/object/py_function.hpp:38
#5  0x00007f72aeb01c2e in boost::python::objects::function::call(_object*, _object*) const () from /usr/lib/libboost_python-py26.so.1.40.0
#6  0x00007f72aeb01ed8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#7  0x00007f72aeb0954b in boost::python::handle_exception_impl(boost::function0<void>) () from /usr/lib/libboost_python-py26.so.1.40.0
#8  0x00007f72aeafe7d8 in ?? () from /usr/lib/libboost_python-py26.so.1.40.0
#9  0x000000000041f0c7 in PyObject_Call (func=<Boost.Python.function at remote 0xd18dc0>, arg=<unknown at remote 0x7fff0b774db0>, kw=<unknown at remote 0x7fff0b774db0>) at ../Objects/abstract.c:2492
#10 0x00000000004a7378 in do_call (f=Frame 0x2c23960, for file SiebMaschine.py, line 162, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3968
#11 call_function (f=Frame 0x2c23960, for file SiebMaschine.py, line 162, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3773
#12 PyEval_EvalFrameEx (f=Frame 0x2c23960, for file SiebMaschine.py, line 162, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#13 0x00000000004a9671 in PyEval_EvalCodeEx (co=0x25c0288, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#14 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff0b774dc0, globals=<unknown at remote 0x7fff0b774db0>, locals=<unknown at remote 0x7fff0b774db0>) at ../Python/ceval.c:541
#15 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0xa8dde4 "SiebMaschine.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1339
#16 PyRun_FileExFlags (fp=<value optimized out>, filename=0xa8dde4 "SiebMaschine.py", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x0) at ../Python/pythonrun.c:1325
#17 0x00000000004a0c37 in builtin_execfile (self=<value optimized out>, args=<value optimized out>) at ../Python/bltinmodule.c:794
#18 0x00000000004a7c5e in call_function (f=Frame 0x2c23760, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 162, in runScript (script='SiebMaschine.py'), throwflag=<value optimized out>) at ../Python/ceval.c:3750
#19 PyEval_EvalFrameEx (f=Frame 0x2c23760, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 162, in runScript (script='SiebMaschine.py'), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#20 0x00000000004a9671 in PyEval_EvalCodeEx (co=0xa79288, globals=<value optimized out>, locals=<value optimized out>, args=0x1, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=(<cell at remote 0x178eef8>, <cell at remote 0x178ef30>, <cell at remote 0x1896520>)) at ../Python/ceval.c:3000
#21 0x00000000004a7809 in fast_function (f=Frame 0x1aa6770, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x25c01b8>), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#22 call_function (f=Frame 0x1aa6770, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x25c01b8>), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#23 PyEval_EvalFrameEx (f=Frame 0x1aa6770, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 177, in userSession (qt4=True, runScript=<function at remote 0x25c01b8>), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#24 0x00000000004a9671 in PyEval_EvalCodeEx (co=0xa79300, globals=<value optimized out>, locals=<value optimized out>, args=0xa80330, argcount=<value optimized out>, kws=<value optimized out>, kwcount=1, defs=0xb9a568, defcount=1, closure=0x0) at ../Python/ceval.c:3000
#25 0x00000000004a7809 in fast_function (f=Frame 0xb6cc20, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3846
#26 call_function (f=Frame 0xb6cc20, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:3771
#27 PyEval_EvalFrameEx (f=Frame 0xb6cc20, for file ./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug, line 245, in <module> (), throwflag=<value optimized out>) at ../Python/ceval.c:2412
#28 0x00000000004a9671 in PyEval_EvalCodeEx (co=0xa79918, globals=<value optimized out>, locals=<value optimized out>, args=0x0, argcount=<value optimized out>, kws=<value optimized out>, kwcount=0, defs=0x0, defcount=0, closure=0x0) at ../Python/ceval.c:3000
#29 0x00000000004a9742 in PyEval_EvalCode (co=0x7fff0b774dc0, globals=<unknown at remote 0x7fff0b774db0>, locals=<unknown at remote 0x7fff0b774db0>) at ../Python/ceval.c:541
#30 0x00000000004c9a0e in run_mod (fp=<value optimized out>, filename=0x7fff0b777cb9 "./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7fff0b775c50) at ../Python/pythonrun.c:1339
#31 PyRun_FileExFlags (fp=<value optimized out>, filename=0x7fff0b777cb9 "./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug", start=<value optimized out>, globals=<value optimized out>, locals=<value optimized out>, closeit=1, flags=0x7fff0b775c50) at ../Python/pythonrun.c:1325
#32 0x00000000004c9c24 in PyRun_SimpleFileExFlags (fp=<value optimized out>, filename=0x7fff0b777cb9 "./../../../../dem/yade/cleanCompDebug/build/bin/yade-cleanCompDebug", closeit=1, flags=0x7fff0b775c50) at ../Python/pythonrun.c:935
#33 0x000000000041a7ff in Py_Main (argc=10940544, argv=<value optimized out>) at ../Modules/main.c:572
#34 0x00007f72b0d54c4d in __libc_start_main (main=<value optimized out>, argc=<value optimized out>, ubp_av=<value optimized out>, init=<value optimized out>, fini=<value optimized out>, rtld_fini=<value optimized out>, stack_end=0x7fff0b775d68) at libc-start.c:226
#35 0x00000000004199f9 in _start ()
Aborted

Changed in yade:
status:	Fix Released → In Progress

Revision history for this message

Václav Šmilauer (eudoxos) wrote on 2010-12-02:

#15

Sorry, the last one is not related to this bug. You can fix it easily, right? There is obviously a loop over bodies in VTKRecorder which does not check if(!b) continue; (to handle erased bodies).

Changed in yade:
status:	In Progress → Fix Released

Revision history for this message

Anton Gladky (gladky-anton) wrote on 2010-12-02:

#16

Ok, thanks, fixed in r2585.

Anton

2010/12/2 Václav Šmilauer <email address hidden>

> Sorry, the last one is not related to this bug. You can fix it easily,
> right? There is obviously a loop over bodies in VTKRecorder which does
> not check if(!b) continue; (to handle erased bodies).
>
> ** Changed in: yade
> Status: In Progress => Fix Released
>
> --
> You received this bug notification because you are a direct subscriber
> of the bug.
> https://bugs.launchpad.net/bugs/681018
>
> Title:
> Crash in last revision
>
> Status in Yet Another Dynamic Engine:
> Fix Released
>
> Bug description:
> The simulation starts and after couple seconds of simulation it crashes.
>
> The problem is in O.bodies.erase(i.id)
>
> Test script and backtrace are attached.
>
> To unsubscribe from this bug, go to:
> https://bugs.launchpad.net/yade/+bug/681018/+subscribe
>

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Crash in last revision

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