----------------------------------------------------------------------------------------- num_spheres=50 ----------------------------------------------------------------------------------------- Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641DEBUG wait: WAIT! /home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:207 action: Resize bounds containers from 0 to 112, will std::sort. DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 212 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! --------------------------------------------------------------------------- RuntimeError Traceback (most recent call last) /home/son/Desktop/myYade/install/bin/yade-Unknown in () ----> 1 execfile('Error_getNeighbors.py') #### /home/son/Desktop/myYade/install/bin/yade-Unknown in () 137 138 for i in range(unsat.nCells()): --> 139 unsat.getNeighbors(i) 140 ## Segmentation fault (core dumped) 141 RuntimeError: CGAL ERROR: precondition violation! Expr: dimension() == 3 File: /usr/include/CGAL/Triangulation_3.h Line: 799 ----------------------------------------------------------------------------------------- num_spheres=100 ----------------------------------------------------------------------------------------- Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:207 action: Resize bounds containers from 0 to 212, will std::sort. DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 312 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! ------------------------------------------------------------------------------------------ num_spheres=150 Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! /home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:207 action: Resize bounds containers from 0 to 312, will std::sort. DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 412 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! ------------------------------------------------------------------------------------------ num_spheres=200 ----------------------------------------------------------------------------------------- Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 runDEBUG : RUN/home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:207 action: Resize bounds containers from 0 to 412, will std::sort. (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp: 641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 512 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-obqZZX/tmp-0' GNU gdb (Ubuntu 7.7.1-0ubuntu5~14.04.3) 7.7.1 Copyright (C) 2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-linux-gnu". Type "show configuration" for configuration details. For bug reporting instructions, please see: . Find the GDB manual and other documentation resources online at: . For help, type "help". Type "apropos word" to search for commands related to "word". Could not attach to process. If your uid matches the uid of the target process, check the setting of /proc/sys/kernel/yama/ptrace_scope, or try again as the root user. For more details, see /etc/sysctl.d/10-ptrace.conf /tmp/yade-obqZZX/tmp-0:1: Error in sourced command file: ptrace: Operation not permitted. (gdb) quit Segmentation fault (core dumped) ------------------------------------------------------------------------------------------ num_spheres=250 ----------------------------------------------------------------------------------------- Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)DEBUG ! /home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! 207 action: Resize bounds containers from 0 to 512, will std::sort. DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 612 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! --------------------------------------------------------------------------- RuntimeError Traceback (most recent call last) /home/son/Desktop/myYade/install/bin/yade-Unknown in () ----> 1 execfile('Error_getNeighbors.py') #### /home/son/Desktop/myYade/install/bin/yade-Unknown in () 137 138 for i in range(unsat.nCells()): --> 139 unsat.getNeighbors(i) 140 ## Segmentation fault (core dumped) 141 RuntimeError: CGAL ERROR: precondition violation! Expr: dimension() == 3 File: /usr/include/CGAL/Triangulation_3.h Line: 799 ------------------------------------------------------------------------------------------ num_spheres=300 ----------------------------------------------------------------------------------------- Yade [1]: execfile('Error_getNeighbors.py') #### DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 0. 0.2995, cdf=0, cdf2=0 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 1. 0.3, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 2. 0.4245, cdf=0.35, cdf2=1085,8516816647427 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 3. 0.425, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 4. 0.5, cdf=0.7, cdf2=1467,4861723291381 DEBUG /home/son/Desktop/myYade/trunk/pkg/dem/SpherePack.cpp:129 makeCloud: 5. 0.7, cdf=1, cdf2=1590,2628427143145 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/pkg/common/InsertionSortCollider.cpp:207 action: Resize bounds containers from 0 to 612, will std::sort. DEBUG /home/son/Desktop/myYade/trunk/core/ForceContainerParallel.cpp:224 resize: Resize ForceContainer from the size 0 to the size 712 DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! INFO /home/son/Desktop/myYade/trunk/core/Omega.cpp:265 saveSimulation: Saving file 1kPacking.yade DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:635 run: RUN (1000 to go)! DEBUG /home/son/Desktop/myYade/trunk/py/wrapper/yadeWrapper.cpp:641 wait: WAIT! SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-aCNfzm/tmp-0' GNU gdb (Ubuntu 7.7.1-0ubuntu5~14.04.3) 7.7.1 Copyright (C) 2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Type "show copying" and "show warranty" for details. This GDB was configured as "x86_64-linux-gnu". Type "show configuration" for configuration details. For bug reporting instructions, please see: . Find the GDB manual and other documentation resources online at: . For help, type "help". Type "apropos word" to search for commands related to "word". Could not attach to process. If your uid matches the uid of the target process, check the setting of /proc/sys/kernel/yama/ptrace_scope, or try again as the root user. For more details, see /etc/sysctl.d/10-ptrace.conf /tmp/yade-aCNfzm/tmp-0:1: Error in sourced command file: ptrace: Operation not permitted. (gdb) quit Segmentation fault (core dumped)