I: Copying COW directory I: forking: rm -rf /var/cache/pbuilder/build/cow.16028 I: forking: cp -al /var/cache/pbuilder/base-xenial-amd64.cow /var/cache/pbuilder/build/cow.16028 I: removed stale ilistfile /var/cache/pbuilder/build/cow.16028/.ilist I: forking: chroot /var/cache/pbuilder/build/cow.16028 cowdancer-ilistcreate /.ilist 'find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i '' I: Invoking pbuilder I: forking: pbuilder build --configfile /etc/pbuilder/pbuilderrc.xenial --debbuildopts -j16 --buildplace /var/cache/pbuilder/build/cow.16028 --buildresult /var/cache/pbuilder/result/ --mirror http://ch.archive.ubuntu.com/ubuntu/ --architecture amd64 --distribution xenial --extrapackages 'libxerces-c-dev=3.2.0+debian-2~ubuntu16.04.1 libxerces-c-doc=3.2.0+debian-2~ubuntu16.04.1 libxerces-c-samples=3.2.0+debian-2~ubuntu16.04.1 libxerces-c3.2=3.2.0+debian-2~ubuntu16.04.1' --no-targz --internal-chrootexec 'chroot /var/cache/pbuilder/build/cow.16028 cow-shell' /data/unsafe-tmp/buildresult/rdeps/freecontact_1.0.21-4.dsc I: Running in no-targz mode I: pbuilder: network access will be disabled during build I: Current time: Wed Mar 27 15:23:22 CET 2019 I: pbuilder-time-stamp: 1553696602 I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: Mounting /var/cache/pbuilder/local_dependencies I: Mounting /var/lib/debarchiver I: policy-rc.d already exists I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/H00_apt_clean starting H00 hook cleaning apt Get:1 http://ch.archive.ubuntu.com/ubuntu xenial-security InRelease [109 kB] Get:2 http://ch.archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] Get:3 http://ch.archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] Get:4 http://ch.archive.ubuntu.com/ubuntu xenial InRelease [247 kB] Get:5 http://ch.archive.ubuntu.com/ubuntu xenial-security/main amd64 Packages [626 kB] Get:6 http://ch.archive.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [430 kB] Get:7 http://ch.archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [925 kB] Get:8 http://ch.archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [740 kB] Get:9 http://ch.archive.ubuntu.com/ubuntu xenial-backports/main amd64 Packages [7280 B] Get:10 http://ch.archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [7804 B] Get:11 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 Packages [1201 kB] Get:12 http://ch.archive.ubuntu.com/ubuntu xenial/universe amd64 Packages [7532 kB] Fetched 12.0 MB in 1s (7100 kB/s) Reading package lists... I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/H00_apt_clean finished I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/H00_ensure_keyring_readable starting I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/H00_ensure_keyring_readable finished I: Obtaining the cached apt archive contents I: Copying source file I: copying [/data/unsafe-tmp/buildresult/rdeps/freecontact_1.0.21-4.dsc] I: copying [/data/unsafe-tmp/buildresult/rdeps/freecontact_1.0.21.orig.tar.xz] I: copying [/data/unsafe-tmp/buildresult/rdeps/freecontact_1.0.21-4.debian.tar.xz] I: Extracting source dpkg-source: info: extracting freecontact in freecontact-1.0.21 dpkg-source: info: unpacking freecontact_1.0.21.orig.tar.xz dpkg-source: info: unpacking freecontact_1.0.21-4.debian.tar.xz dpkg-source: info: applying debian-changes I: using fakeroot in build. I: Installing the build-deps I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/D00_apt-update starting Hit:1 http://ch.archive.ubuntu.com/ubuntu xenial-security InRelease Hit:2 http://ch.archive.ubuntu.com/ubuntu xenial-updates InRelease Hit:3 http://ch.archive.ubuntu.com/ubuntu xenial-backports InRelease Hit:4 http://ch.archive.ubuntu.com/ubuntu xenial InRelease Reading package lists... deb http://ch.archive.ubuntu.com/ubuntu xenial-security main universe deb http://ch.archive.ubuntu.com/ubuntu xenial-updates main universe deb http://ch.archive.ubuntu.com/ubuntu xenial-backports main universe deb http://ch.archive.ubuntu.com/ubuntu/ xenial main universe #deb-src http://ch.archive.ubuntu.com/ubuntu/ xenial main universe I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/D00_apt-update finished I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/D05_local_dependencies starting Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libapt-inst2.0 The following NEW packages will be installed: apt-utils libapt-inst2.0 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/252 kB of archives. After this operation, 1213 kB of additional disk space will be used. Selecting previously unselected package libapt-inst2.0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14545 files and directories currently installed.) Preparing to unpack .../libapt-inst2.0_1.2.31_amd64.deb ... Unpacking libapt-inst2.0:amd64 (1.2.31) ... Selecting previously unselected package apt-utils. Preparing to unpack .../apt-utils_1.2.31_amd64.deb ... Unpacking apt-utils (1.2.31) ... Processing triggers for libc-bin (2.23-0ubuntu11) ... Processing triggers for man-db (2.7.5-1) ... Setting up libapt-inst2.0:amd64 (1.2.31) ... Setting up apt-utils (1.2.31) ... Processing triggers for libc-bin (2.23-0ubuntu11) ... Get:1 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ InRelease Ign:1 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ InRelease Get:2 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Release Ign:2 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Release Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Ign:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Ign:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Ign:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Ign:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Ign:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages Get:3 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ Packages [4648 B] Hit:4 http://ch.archive.ubuntu.com/ubuntu xenial-security InRelease Hit:5 http://ch.archive.ubuntu.com/ubuntu xenial-updates InRelease Hit:6 http://ch.archive.ubuntu.com/ubuntu xenial-backports InRelease Hit:7 http://ch.archive.ubuntu.com/ubuntu xenial InRelease Reading package lists... I: user script /var/cache/pbuilder/build/cow.16028/tmp/hooks/D05_local_dependencies finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9.0.0), automake, autotools-dev, bash-completion, dh-autoreconf, d-shlibs, dpkg-dev (>= 1.16.2), gfortran, libblas-dev | libblas-3.so, libboost-dev, libboost-program-options-dev, liblapack-dev | liblapack-3.so, libtool, libxerces-c-dev, perl, xsdcxx (>= 3.3), doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 14632 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bash-completion{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} gfortran{a} gfortran-5{a} icu-devtools{a} libasn1-8-heimdal{a} libblas-common{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.58-dev{a} libboost-program-options1.58.0{a} libboost1.58-dev{a} libbsd0{a} libclang1-3.6{a} libcurl3-gnutls{a} libedit2{a} libfile-stripnondeterminism-perl{a} libgfortran-5-dev{a} libgfortran3{a} libgnutls30{a} libgssapi-krb5-2{a} libgssapi3-heimdal{a} libhcrypto4-heimdal{a} libheimbase1-heimdal{a} libheimntlm0-heimdal{a} libhogweed4{a} libhx509-5-heimdal{a} libicu-dev{a} libidn11{a} libk5crypto3{a} libkeyutils1{a} libkrb5-26-heimdal{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libllvm3.6v5{a} libnettle6{a} libobjc-5-dev{a} libobjc4{a} libp11-kit0{a} libroken18-heimdal{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libtasn1-6{a} libtool{a} libwind0-heimdal{a} libxerces-c-dev{a} libxerces-c3.1{a} libxerces-c3.2{a} m4{a} po-debconf{a} xsdcxx{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates krb5-locales libltdl-dev libmail-sendmail-perl libsasl2-modules 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 6217 kB/54.9 MB of archives. After unpacking 311 MB will be used. Writing extended state information... Get: 1 http://ch.archive.ubuntu.com/ubuntu xenial-updates/main amd64 bash-completion all 1:2.1-4.2ubuntu1.1 [152 kB] Get: 2 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ libxerces-c3.2 3.2.0+debian-2~ubuntu16.04.1 [848 kB] Get: 3 http://ch.archive.ubuntu.com/ubuntu xenial/universe amd64 d-shlibs all 0.66ubuntu1 [9272 B] Get: 4 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B] Get: 5 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB] Get: 6 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB] Get: 7 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack3 amd64 3.6.0-2ubuntu2 [1938 kB] Get: 8 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ libxerces-c-dev 3.2.0+debian-2~ubuntu16.04.1 [1676 kB] Get: 9 http://ch.archive.ubuntu.com/ubuntu xenial/main amd64 liblapack-dev amd64 3.6.0-2ubuntu2 [1948 kB] Get: 10 http://ch.archive.ubuntu.com/ubuntu xenial/universe amd64 xsdcxx amd64 4.0.0-4 [1864 kB] Fetched 6217 kB in 0s (30.4 MB/s) Selecting previously unselected package bash-completion. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14632 files and directories currently installed.) Preparing to unpack .../bash-completion_1%3a2.1-4.2ubuntu1.1_all.deb ... Unpacking bash-completion (1:2.1-4.2ubuntu1.1) ... Replaced by files in installed package apt (1.2.31) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.10-4_amd64.deb ... Unpacking libsigsegv2:amd64 (2.10-4) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../libbsd0_0.8.2-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.2-1) ... Selecting previously unselected package libnettle6:amd64. Preparing to unpack .../libnettle6_3.2-1ubuntu0.16.04.1_amd64.deb ... Unpacking libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... Selecting previously unselected package libhogweed4:amd64. Preparing to unpack .../libhogweed4_3.2-1ubuntu0.16.04.1_amd64.deb ... Unpacking libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../libidn11_1.32-3ubuntu1.2_amd64.deb ... Unpacking libidn11:amd64 (1.32-3ubuntu1.2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../libp11-kit0_0.23.2-5~ubuntu16.04.1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../libtasn1-6_4.7-3ubuntu0.16.04.3_amd64.deb ... Unpacking libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... Selecting previously unselected package libgnutls30:amd64. Preparing to unpack .../libgnutls30_3.4.10-4ubuntu1.4_amd64.deb ... Unpacking libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... Selecting previously unselected package libroken18-heimdal:amd64. Preparing to unpack .../libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libasn1-8-heimdal:amd64. Preparing to unpack .../libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.13.2+dfsg-5ubuntu2.1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.13.2+dfsg-5ubuntu2.1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../libkeyutils1_1.5.9-8ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-8ubuntu1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.13.2+dfsg-5ubuntu2.1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.13.2+dfsg-5ubuntu2.1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Selecting previously unselected package libhcrypto4-heimdal:amd64. Preparing to unpack .../libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libheimbase1-heimdal:amd64. Preparing to unpack .../libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libwind0-heimdal:amd64. Preparing to unpack .../libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libhx509-5-heimdal:amd64. Preparing to unpack .../libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libkrb5-26-heimdal:amd64. Preparing to unpack .../libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libheimntlm0-heimdal:amd64. Preparing to unpack .../libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libgssapi3-heimdal:amd64. Preparing to unpack .../libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1.16.04.1_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.26.dfsg1-14ubuntu0.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.42+dfsg-2ubuntu3.4_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.4) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d-1ubuntu0.1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../libcurl3-gnutls_7.47.0-1ubuntu2.12_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.12) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../libedit2_3.1-20150325-1ubuntu2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20150325-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-5_amd64.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-9_all.deb ... Unpacking autoconf (2.69-9) ... 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Selecting previously unselected package libobjc-5-dev:amd64. Preparing to unpack .../libobjc-5-dev_5.4.0-6ubuntu1~16.04.11_amd64.deb ... Unpacking libobjc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... Selecting previously unselected package libclang1-3.6:amd64. Preparing to unpack .../libclang1-3.6_1%3a3.6.2-3ubuntu2_amd64.deb ... Unpacking libclang1-3.6:amd64 (1:3.6.2-3ubuntu2) ... Selecting previously unselected package doxygen. Preparing to unpack .../doxygen_1.8.11-1_amd64.deb ... Unpacking doxygen (1.8.11-1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.11_amd64.deb ... Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... Selecting previously unselected package libgfortran-5-dev:amd64. Preparing to unpack .../libgfortran-5-dev_5.4.0-6ubuntu1~16.04.11_amd64.deb ... Unpacking libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... Selecting previously unselected package gfortran-5. 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Preparing to unpack .../libboost1.58-dev_1.58.0+dfsg-5ubuntu3.1_amd64.deb ... Unpacking libboost1.58-dev:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../libboost-dev_1.58.0.1ubuntu1_amd64.deb ... Unpacking libboost-dev:amd64 (1.58.0.1ubuntu1) ... Selecting previously unselected package libboost-program-options1.58.0:amd64. Preparing to unpack .../libboost-program-options1.58.0_1.58.0+dfsg-5ubuntu3.1_amd64.deb ... Unpacking libboost-program-options1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Selecting previously unselected package libboost-program-options1.58-dev:amd64. Preparing to unpack .../libboost-program-options1.58-dev_1.58.0+dfsg-5ubuntu3.1_amd64.deb ... Unpacking libboost-program-options1.58-dev:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Selecting previously unselected package libboost-program-options-dev:amd64. Preparing to unpack .../libboost-program-options-dev_1.58.0.1ubuntu1_amd64.deb ... Unpacking libboost-program-options-dev:amd64 (1.58.0.1ubuntu1) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../libicu-dev_55.1-7ubuntu0.4_amd64.deb ... Unpacking libicu-dev:amd64 (55.1-7ubuntu0.4) ... Selecting previously unselected package liblapack3. Preparing to unpack .../liblapack3_3.6.0-2ubuntu2_amd64.deb ... Unpacking liblapack3 (3.6.0-2ubuntu2) ... Selecting previously unselected package liblapack-dev. Preparing to unpack .../liblapack-dev_3.6.0-2ubuntu2_amd64.deb ... Unpacking liblapack-dev (3.6.0-2ubuntu2) ... Selecting previously unselected package libxerces-c3.2:amd64. Preparing to unpack .../libxerces-c3.2_3.2.0+debian-2~ubuntu16.04.1_amd64.deb ... Unpacking libxerces-c3.2:amd64 (3.2.0+debian-2~ubuntu16.04.1) ... Selecting previously unselected package libxerces-c-dev. Preparing to unpack .../libxerces-c-dev_3.2.0+debian-2~ubuntu16.04.1_amd64.deb ... Unpacking libxerces-c-dev (3.2.0+debian-2~ubuntu16.04.1) ... Selecting previously unselected package libxerces-c3.1:amd64. Preparing to unpack .../libxerces-c3.1_3.1.3+debian-1_amd64.deb ... Unpacking libxerces-c3.1:amd64 (3.1.3+debian-1) ... Selecting previously unselected package xsdcxx. Preparing to unpack .../xsdcxx_4.0.0-4_amd64.deb ... Unpacking xsdcxx (4.0.0-4) ... Processing triggers for man-db (2.7.5-1) ... Processing triggers for libc-bin (2.23-0ubuntu11) ... Setting up bash-completion (1:2.1-4.2ubuntu1.1) ... Setting up libsigsegv2:amd64 (2.10-4) ... Setting up libbsd0:amd64 (0.8.2-1) ... Setting up libnettle6:amd64 (3.2-1ubuntu0.16.04.1) ... Setting up libhogweed4:amd64 (3.2-1ubuntu0.16.04.1) ... Setting up libidn11:amd64 (1.32-3ubuntu1.2) ... Setting up libp11-kit0:amd64 (0.23.2-5~ubuntu16.04.1) ... Setting up libtasn1-6:amd64 (4.7-3ubuntu0.16.04.3) ... Setting up libgnutls30:amd64 (3.4.10-4ubuntu1.4) ... Setting up libroken18-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libasn1-8-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Setting up libkeyutils1:amd64 (1.5.9-8ubuntu1) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-5ubuntu2.1) ... Setting up libhcrypto4-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libheimbase1-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libwind0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20150920+dfsg-4ubuntu1.16.04.1) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-14ubuntu0.1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu3.4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d-1ubuntu0.1) ... Setting up libcurl3-gnutls:amd64 (7.47.0-1ubuntu2.12) ... Setting up libedit2:amd64 (3.1-20150325-1ubuntu2) ... Setting up m4 (1.4.17-5) ... Setting up autoconf (2.69-9) ... Setting up autotools-dev (20150820.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up autopoint (0.19.7-2ubuntu3.1) ... Setting up d-shlibs (0.66ubuntu1) ... Setting up po-debconf (1.0.19) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtool (2.4.6-0.1) ... Setting up libllvm3.6v5:amd64 (1:3.6.2-3ubuntu2) ... Setting up libobjc4:amd64 (5.4.0-6ubuntu1~16.04.11) ... Setting up libobjc-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... Setting up libclang1-3.6:amd64 (1:3.6.2-3ubuntu2) ... Setting up doxygen (1.8.11-1) ... Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.11) ... Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.11) ... Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.11) ... Setting up gfortran (4:5.3.1-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up icu-devtools (55.1-7ubuntu0.4) ... Setting up libblas-common (3.6.0-2ubuntu2) ... Setting up libblas3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libboost1.58-dev:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Setting up libboost-dev:amd64 (1.58.0.1ubuntu1) ... Setting up libboost-program-options1.58.0:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Setting up libboost-program-options1.58-dev:amd64 (1.58.0+dfsg-5ubuntu3.1) ... Setting up libboost-program-options-dev:amd64 (1.58.0.1ubuntu1) ... Setting up libicu-dev:amd64 (55.1-7ubuntu0.4) ... Setting up liblapack3 (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up liblapack-dev (3.6.0-2ubuntu2) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libxerces-c3.2:amd64 (3.2.0+debian-2~ubuntu16.04.1) ... Setting up libxerces-c-dev (3.2.0+debian-2~ubuntu16.04.1) ... Setting up libxerces-c3.1:amd64 (3.1.3+debian-1) ... Setting up xsdcxx (4.0.0-4) ... Setting up dh-strip-nondeterminism (0.015-1) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up dh-autoreconf (11) ... Processing triggers for libc-bin (2.23-0ubuntu11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... lintian is already the newest version (2.5.43ubuntu0.1). libxerces-c-dev is already the newest version (3.2.0+debian-2~ubuntu16.04.1). libxerces-c-dev set to manually installed. libxerces-c3.2 is already the newest version (3.2.0+debian-2~ubuntu16.04.1). libxerces-c3.2 set to manually installed. The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot libxerces-c-doc libxerces-c-samples 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/1954 kB of archives. After this operation, 24.8 MB of additional disk space will be used. Get:1 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ libxerces-c-doc 3.2.0+debian-2~ubuntu16.04.1 [1737 kB] Get:2 file:/var/cache/pbuilder/local_dependencies/xerces-xenial ./ libxerces-c-samples 3.2.0+debian-2~ubuntu16.04.1 [130 kB] Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 29575 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.20.2-1ubuntu1_amd64.deb ... Unpacking libfakeroot:amd64 (1.20.2-1ubuntu1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.20.2-1ubuntu1_amd64.deb ... Unpacking fakeroot (1.20.2-1ubuntu1) ... Selecting previously unselected package libxerces-c-doc. Preparing to unpack .../libxerces-c-doc_3.2.0+debian-2~ubuntu16.04.1_all.deb ... Unpacking libxerces-c-doc (3.2.0+debian-2~ubuntu16.04.1) ... Selecting previously unselected package libxerces-c-samples. Preparing to unpack .../libxerces-c-samples_3.2.0+debian-2~ubuntu16.04.1_amd64.deb ... Unpacking libxerces-c-samples (3.2.0+debian-2~ubuntu16.04.1) ... Processing triggers for man-db (2.7.5-1) ... Setting up libfakeroot:amd64 (1.20.2-1ubuntu1) ... Setting up fakeroot (1.20.2-1ubuntu1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxerces-c-doc (3.2.0+debian-2~ubuntu16.04.1) ... Setting up libxerces-c-samples (3.2.0+debian-2~ubuntu16.04.1) ... I: Copying back the cached apt archive contents I: new cache content 'liblapack-dev_3.6.0-2ubuntu2_amd64.deb' added I: new cache content 'bash-completion_1%3a2.1-4.2ubuntu1.1_all.deb' added I: new cache content 'xsdcxx_4.0.0-4_amd64.deb' added I: new cache content 'libblas3_3.6.0-2ubuntu2_amd64.deb' added I: new cache content 'libblas-common_3.6.0-2ubuntu2_amd64.deb' added I: new cache content 'liblapack3_3.6.0-2ubuntu2_amd64.deb' added I: new cache content 'libblas-dev_3.6.0-2ubuntu2_amd64.deb' added I: new cache content 'd-shlibs_0.66ubuntu1_all.deb' added I: Building the package I: Running cd /build/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -j16 -j16 -rfakeroot dpkg-buildpackage: source package freecontact dpkg-buildpackage: source version 1.0.21-4 dpkg-buildpackage: source distribution unstable dpkg-buildpackage: source changed by Andreas Tille dpkg-buildpackage: host architecture amd64 dpkg-source: info: using options from freecontact-1.0.21/debian/source/options: --single-debian-patch --extend-diff-ignore=(^|/)(config.guess|config.sub|INSTALL)$ dh clean --parallel --with bash-completion --with autoreconf dh_testdir -O--parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/freecontact-1.0.21' rm -f build-indep-stamp dh_auto_clean make[1]: Leaving directory '/build/freecontact-1.0.21' dh_autoreconf_clean -O--parallel dh_clean -O--parallel dpkg-source: info: using options from freecontact-1.0.21/debian/source/options: --single-debian-patch --extend-diff-ignore=(^|/)(config.guess|config.sub|INSTALL)$ dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building freecontact using existing ./freecontact_1.0.21.orig.tar.xz dpkg-source: info: building freecontact in freecontact_1.0.21-4.debian.tar.xz dpkg-source: info: building freecontact in freecontact_1.0.21-4.dsc dh build --parallel --with bash-completion --with autoreconf dh_testdir -O--parallel dh_update_autotools_config -O--parallel dh_autoreconf -O--parallel libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/freecontact-1.0.21' dh_auto_configure -- --with-boost-libdir=/usr/lib/x86_64-linux-gnu ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-boost-libdir=/usr/lib/x86_64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: -O3 enables: -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops checking for boostlib >= 1.20.0... yes checking whether the Boost::Program_Options library is available... yes checking for exit in -lboost_program_options... yes checking whether HAVE_BOOST_PROGRAM_OPTIONS is declared... yes checking for OpenMP flag of C++ compiler... -fopenmp checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lmkl_gf_lp64... no checking for sgemm_ in -lmkl... no checking for sgemm_ in -framework vecLib... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for Xerces C++ Parser headers in /usr/include and /usr/include/xercesc... found checking for Xerces C++ Parser libraries... found checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown checking for x86 cpuid 0x00000001 output... 50654:5100800:7ffefbff:bfebfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes checking whether sse3 is supported... yes checking whether ssse3 is supported... yes checking whether sse4.1 is supported... yes checking whether sse4.2 is supported... yes checking whether avx is supported... yes checking whether C++ compiler accepts -mmmx... yes checking whether C++ compiler accepts -msse... yes checking whether C++ compiler accepts -msse2... yes checking whether C++ compiler accepts -msse3... yes checking whether C++ compiler accepts -mssse3... yes checking whether C++ compiler accepts -msse4.1... yes checking whether C++ compiler accepts -msse4.2... yes checking whether C++ compiler accepts -mavx... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Doxyfile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/freecontact-1.0.21' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/freecontact-1.0.21' dh_auto_configure -- --with-blas=blas --with-boost-libdir=/usr/lib/x86_64-linux-gnu && /usr/bin/make -C lib doxygen-doc && touch override_dh_auto_configure-indep ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-blas=blas --with-boost-libdir=/usr/lib/x86_64-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for g77... no checking for xlf... no checking for f77... f77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether f77 accepts -g... yes checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking how to print strings... printf checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for f77 option to produce PIC... -fPIC checking if f77 PIC flag -fPIC works... yes checking if f77 static flag -static works... yes checking if f77 supports -c -o file.o... yes checking if f77 supports -c -o file.o... (cached) yes checking whether the f77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: -O3 enables: -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops checking for boostlib >= 1.20.0... yes checking whether the Boost::Program_Options library is available... yes checking for exit in -lboost_program_options... yes checking whether HAVE_BOOST_PROGRAM_OPTIONS is declared... yes checking for OpenMP flag of C++ compiler... -fopenmp checking how to get verbose linking output from f77... -v checking for Fortran 77 libraries of f77... -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_ in -lblas... yes checking for cheev_... no checking for cheev_ in -llapack... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for Xerces C++ Parser headers in /usr/include and /usr/include/xercesc... found checking for Xerces C++ Parser libraries... found checking for Xerces C++ Parser... yes checking for xsdcxx... xsdcxx checking for x86 cpuid output... unknown checking for x86 cpuid 0x00000001 output... 50654:2100800:7ffefbff:bfebfbff checking whether mmx is supported... yes checking whether sse is supported... yes checking whether sse2 is supported... yes checking whether sse3 is supported... yes checking whether ssse3 is supported... yes checking whether sse4.1 is supported... yes checking whether sse4.2 is supported... yes checking whether avx is supported... yes checking whether C++ compiler accepts -mmmx... yes checking whether C++ compiler accepts -msse... yes checking whether C++ compiler accepts -msse2... yes checking whether C++ compiler accepts -msse3... yes checking whether C++ compiler accepts -mssse3... yes checking whether C++ compiler accepts -msse4.1... yes checking whether C++ compiler accepts -msse4.2... yes checking whether C++ compiler accepts -mavx... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Doxyfile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating lib/config.h config.status: lib/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands make[2]: Entering directory '/build/freecontact-1.0.21/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='libfreecontact' DOCDIR='../doxygen-doc' VERSION='1.0.21' PERL_PATH='/usr/bin/perl' HAVE_DOT='NO' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile Notice: Output directory `../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/freecontact-1.0.21/lib Reading and parsing tag files Parsing files Preprocessing /build/freecontact-1.0.21/lib/config.h... Parsing file /build/freecontact-1.0.21/lib/config.h... Preprocessing /build/freecontact-1.0.21/lib/freecontact.cpp... Parsing file /build/freecontact-1.0.21/lib/freecontact.cpp... Preprocessing /build/freecontact-1.0.21/lib/freecontact.h... Parsing file /build/freecontact-1.0.21/lib/freecontact.h... Reading /build/freecontact-1.0.21/lib/glassofast-real.f90... Prepassing fixed form of /build/freecontact-1.0.21/lib/glassofast-real.f90 Parsing file /build/freecontact-1.0.21/lib/glassofast-real.f90... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Creating members for template instances... Computing class relations... Add enum values to enums... Searching for member function documentation... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file config.h... Generating code for file freecontact.cpp... Generating code for file freecontact.h... Generating code for file glassofast-real.f90... Generating file documentation... Generating docs for file config.h... Generating docs for file freecontact.cpp... Generating docs for file freecontact.h... Generating docs for file glassofast-real.f90... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace freecontact Generating docs for compound freecontact::_glasso_timer... Generating docs for compound freecontact::_rawscore_calc_t... Generating docs for compound freecontact::af_vector... Generating docs for compound freecontact::ali_t... Generating docs for compound freecontact::alilen_error... Generating docs for compound freecontact::contact_t... Generating docs for compound freecontact::cov_vector... Generating docs for compound freecontact::ct_vector... Generating docs for compound freecontact::d2matrix... Generating docs for compound freecontact::icme_timeout_error... Generating docs for compound freecontact::parset_t... Generating docs for compound freecontact::pf_vector... Generating docs for compound freecontact::predictor... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 374/65536 hits=5342 misses=376 finished... make[2]: Leaving directory '/build/freecontact-1.0.21/lib' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_build -O--parallel make -j16 make[1]: Entering directory '/build/freecontact-1.0.21' Making all in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/freecontact-1.0.21/lib' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp /bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbranch-count-reg -fcaller-saves -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fexpensive-optimizations -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline-functions -finline-functions-called-once -finline-small-functions -fipa-cp -fipa-cp-alignment -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-sra -fisolate-erroneous-paths-dereference -flra-remat -fmove-loop-invariants -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeephole2 -fpredictive-commoning -freorder-blocks -freorder-blocks-and-partition -freorder-functions -frerun-cse-after-loop -fschedule-insns2 -fshrink-wrap -fsplit-wide-types -fssa-phiopt -fstrict-aliasing -fstrict-overflow -fthread-jumps -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-copy-prop -ftree-copyrename -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funswitch-loops -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -pthread -version-info 0:0:0 -Wl,-Bsymbolic-functions -Wl,-z,relro -o libfreecontact.la -rpath /usr/lib/x86_64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lquadmath -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/5/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o -fopenmp -pthread -g -O2 -fstack-protector-strong -pthread -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfreecontact.so.0" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so.0") libtool: link: (cd ".libs" && rm -f "libfreecontact.so" && ln -s "libfreecontact.so.0.0.0" "libfreecontact.so") libtool: link: ar cru .libs/libfreecontact.a libfreecontact_la-freecontact.o libfreecontact_la-glassofast-real.o libtool: link: ranlib .libs/libfreecontact.a libtool: link: ( cd ".libs" && rm -f "libfreecontact.la" && ln -s "../libfreecontact.la" "libfreecontact.la" ) make[3]: Leaving directory '/build/freecontact-1.0.21/lib' make[2]: Leaving directory '/build/freecontact-1.0.21/lib' Making all in src make[2]: Entering directory '/build/freecontact-1.0.21/src' g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact.o `test -f 'freecontact.cpp' || echo './'`freecontact.cpp xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ BioXSD-1.1.xsd sed -e 's|__pkgdatadir__|/usr/share/freecontact|g;s|__examplesdir__|/usr/share/doc/freecontact/examples|g;s|__sysconfdir__|/etc|g;s|__bindir__|/usr/bin|g;s|__PACKAGE_VERSION__|1.0.21|g' "freecontact.cpp" | \ pod2man --utf8 -c 'User Commands' -r "1.0.21" -name FREECONTACT > "freecontact.1" xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_input.xsd xsdcxx cxx-tree --location-map http://bioxsd.org/BioXSD-1.1.xsd=BioXSD-1.1.xsd \ --namespace-map http://rostlab.org/freecontact/input=freecontact_input_xsd \ --namespace-map http://rostlab.org/freecontact/output=freecontact_output_xsd \ --namespace-map http://bioxsd.org/BioXSD-1.1=BioXSD \ --generate-serialization --generate-doxygen \ --generate-polymorphic --polymorphic-type-all \ --omit-default-attributes \ --root-element-all \ --hxx-suffix _xsd.hxx --cxx-suffix _xsd.cxx \ freecontact_output.xsd g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-BioXSD-1.1_xsd.o `test -f 'BioXSD-1.1_xsd.cxx' || echo './'`BioXSD-1.1_xsd.cxx g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_output_xsd.o `test -f 'freecontact_output_xsd.cxx' || echo './'`freecontact_output_xsd.cxx g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-_write_bioxsd.o `test -f '_write_bioxsd.cpp' || echo './'`_write_bioxsd.cpp g++ -DHAVE_CONFIG_H -I. -I../lib -I../lib -I../src -I/usr/include -I/usr/include/xercesc -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o freecontact-freecontact_input_xsd.o `test -f 'freecontact_input_xsd.cxx' || echo './'`freecontact_input_xsd.cxx /bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -L/usr/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/freecontact-1.0.21' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_auto_test -O--parallel make -j16 check make[1]: Entering directory '/build/freecontact-1.0.21' Making check in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' make[2]: Leaving directory '/build/freecontact-1.0.21/lib' Making check in src make[2]: Entering directory '/build/freecontact-1.0.21/src' make test_freecontact make[3]: Entering directory '/build/freecontact-1.0.21/src' make[3]: Nothing to be done for 'test_freecontact'. make[3]: Leaving directory '/build/freecontact-1.0.21/src' make check-TESTS make[3]: Entering directory '/build/freecontact-1.0.21/src' make[4]: Entering directory '/build/freecontact-1.0.21/src' PASS: test_freecontact ============================================================================ Testsuite summary for freecontact 1.0.21 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/freecontact-1.0.21/src' make[3]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/freecontact-1.0.21' make[1]: Leaving directory '/build/freecontact-1.0.21' dh binary --parallel --with bash-completion --with autoreconf dh_testroot -O--parallel dh_prep -O--parallel dh_auto_install -O--parallel make -j16 install DESTDIR=/build/freecontact-1.0.21/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/freecontact-1.0.21' Making install in lib make[2]: Entering directory '/build/freecontact-1.0.21/lib' make[3]: Entering directory '/build/freecontact-1.0.21/lib' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/include' /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu' /usr/bin/install -c -m 644 freecontact.h '/build/freecontact-1.0.21/debian/tmp/usr/include' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) libtool: install: /usr/bin/install -c .libs/libfreecontact.lai /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.la libtool: install: /usr/bin/install -c .libs/libfreecontact.a /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.a libtool: install: chmod 644 /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.a libtool: install: ranlib /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.a make[3]: Leaving directory '/build/freecontact-1.0.21/lib' make[2]: Leaving directory '/build/freecontact-1.0.21/lib' Making install in src make[2]: Entering directory '/build/freecontact-1.0.21/src' make[3]: Entering directory '/build/freecontact-1.0.21/src' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/bin' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/freecontact' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/freecontact' /bin/mkdir -p '/build/freecontact-1.0.21/debian/tmp/usr/share/man/man1' /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/freecontact-1.0.21/debian/tmp/usr/bin' /usr/bin/install -c -m 644 BioXSD-1.1.xsd freecontact_input.xsd freecontact_output.xsd '/build/freecontact-1.0.21/debian/tmp/usr/share/freecontact' /usr/bin/install -c -m 644 demo_1000.aln demo_1000.psicov.50 PF00071_v25_999.fa PF00071_v25_999.xml PF00071_v25_999.evfold.50 PF00071_v25_999.evfold.50.xml '/build/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' /usr/bin/install -c a2m2aln '/build/freecontact-1.0.21/debian/tmp/usr/share/freecontact' /usr/bin/install -c -m 644 freecontact.1 '/build/freecontact-1.0.21/debian/tmp/usr/share/man/man1' libtool: install: /usr/bin/install -c .libs/freecontact /build/freecontact-1.0.21/debian/tmp/usr/bin/freecontact make[3]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Leaving directory '/build/freecontact-1.0.21/src' make[2]: Entering directory '/build/freecontact-1.0.21' make[3]: Entering directory '/build/freecontact-1.0.21' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/freecontact-1.0.21' make[2]: Leaving directory '/build/freecontact-1.0.21' make[1]: Leaving directory '/build/freecontact-1.0.21' debian/rules override_dh_install make[1]: Entering directory '/build/freecontact-1.0.21' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --devunversioned \ --override s/libblas3-dev/libblas-dev/ \ --v5 \ --override s/libgfortran3-dev/libgfortran-5-dev/ \ --override s/libquadmath0-dev/libgcc-5-dev/ \ --override s/liblapack3-dev/liblapack-dev/ \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfreecontact-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfreecontact0v5/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.a debian/libfreecontact-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so debian/libfreecontact-dev/usr/lib/x86_64-linux-gnu mv /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0 debian/libfreecontact0v5/usr/lib/x86_64-linux-gnu mv /build/freecontact-1.0.21/debian/tmp/usr/lib/x86_64-linux-gnu/libfreecontact.so.0.0.0 debian/libfreecontact0v5/usr/lib/x86_64-linux-gnu PKGDEV=libfreecontact-dev PKGSHL=libfreecontact0v5 install -d -m 755 debian/libfreecontact-dev/usr/include mv debian/tmp/usr/include/freecontact.h debian/libfreecontact-dev/usr/include make[1]: Leaving directory '/build/freecontact-1.0.21' debian/rules override_dh_installdocs make[1]: Entering directory '/build/freecontact-1.0.21' dh_installdocs find debian -name jquery.js -delete make[1]: Leaving directory '/build/freecontact-1.0.21' dh_installchangelogs -O--parallel dh_installman -O--parallel debian/rules override_dh_bash-completion make[1]: Entering directory '/build/freecontact-1.0.21' echo "Until bug #668254 is fixed we need to override this" Until bug #668254 is fixed we need to override this mkdir -p debian/freecontact/usr/share/bash-completion/completions cp -a freecontact.bash-completion debian/freecontact/usr/share/bash-completion/completions make[1]: Leaving directory '/build/freecontact-1.0.21' dh_lintian -O--parallel dh_perl -O--parallel dh_link -O--parallel dh_strip_nondeterminism -O--parallel debian/rules override_dh_compress make[1]: Entering directory '/build/freecontact-1.0.21' dh_compress -Xlibfreecontact.tag -Xdemo_1000.aln -XPF00071_v25_999.fa -XPF00071_v25_999.xml make[1]: Leaving directory '/build/freecontact-1.0.21' dh_fixperms -O--parallel debian/rules override_dh_strip make[1]: Entering directory '/build/freecontact-1.0.21' dh_strip --dbg-package=libfreecontact0-dbg make[1]: Leaving directory '/build/freecontact-1.0.21' dh_makeshlibs -O--parallel dh_shlibdeps -O--parallel dh_installdeb -O--parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/freecontact-1.0.21' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/freecontact-1.0.21' dh_md5sums -O--parallel dh_builddeb -O--parallel dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-4_amd64.deb'. dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-4_amd64.deb'. dpkg-deb: building package 'libfreecontact0v5' in '../libfreecontact0v5_1.0.21-4_amd64.deb'. dpkg-deb: building package 'libfreecontact0-dbg' in '../libfreecontact0-dbg_1.0.21-4_amd64.deb'. dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-4_all.deb'. dpkg-source: info: using options from freecontact-1.0.21/debian/source/options: --single-debian-patch --extend-diff-ignore=(^|/)(config.guess|config.sub|INSTALL)$ dpkg-buildpackage: binary and diff upload (original source NOT included) I: copying local configuration I: Copying back the cached apt archive contents I: unmounting /var/lib/debarchiver filesystem I: unmounting /var/cache/pbuilder/local_dependencies filesystem I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: Current time: Wed Mar 27 15:28:25 CET 2019 I: pbuilder-time-stamp: 1553696905 I: Cleaning COW directory I: forking: rm -rf /var/cache/pbuilder/build/cow.16028