hhsuite 3.0~beta2+dfsg-1 (amd64 binary) in ubuntu zesty
HH-suite is an open-source software package for sensitive protein sequence
searching based on the pairwise alignment of hidden Markov models (HMMs).
.
This package contains HHsearch and HHblits among other programs and utilities.
.
HHsearch takes as input a multiple sequence alignment (MSA) or profile HMM
and searches a database of HMMs (e.g. PDB, Pfam, or InterPro) for homologous
proteins. HHsearch is often used for protein structure prediction to detect
homologous templates and to build highly accurate query-template pairwise
alignments for homology modeling.
.
HHblits can build high-quality MSAs starting from single sequences or from
MSAs. It transforms these into a query HMM and, using an iterative search
strategy, adds significantly similar sequences from the previous search to
the updated query HMM for the next search iteration. Compared to PSI-BLAST,
HHblits is faster, up to twice as sensitive and produces more accurate
alignments.
Details
- Package version:
- 3.0~beta2+dfsg-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Extra
Downloadable files
- hhsuite_3.0~beta2+dfsg-1_amd64.deb (974.7 KiB)
Package relationships
- Breaks: