ea-utils binary package in Ubuntu Xenial armhf

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 .
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 .
 Main Tools are:
 .
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2015-12-10 07:59:14 UTC Published Ubuntu Xenial armhf release universe science Optional 1.1.2+dfsg-3
  • Published
  • Copied from ubuntu xenial-proposed armhf in Primary Archive for Ubuntu
  Deleted Ubuntu Xenial armhf proposed universe science Optional 1.1.2+dfsg-3
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2015-12-10 07:59:46 UTC Superseded Ubuntu Xenial armhf release universe science Optional 1.1.2+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of ea-utils 1.1.2+dfsg-3 in ubuntu xenial PROPOSED
  • Published
  • Copied from ubuntu xenial-proposed armhf in Primary Archive for Ubuntu
  2015-12-11 12:10:09 UTC Deleted Ubuntu Xenial armhf proposed universe science Optional 1.1.2+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2015-12-04 00:55:09 UTC Superseded Ubuntu Xenial armhf release universe science Optional 1.1.2+dfsg-1build1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of ea-utils 1.1.2+dfsg-2 in ubuntu xenial PROPOSED
  • Published
  • Copied from ubuntu xenial-proposed armhf in Primary Archive for Ubuntu
  2015-12-05 06:10:12 UTC Deleted Ubuntu Xenial armhf proposed universe science Optional 1.1.2+dfsg-1build1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  2015-11-13 12:20:14 UTC Superseded Ubuntu Xenial armhf release universe science Optional 1.1.2+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by armhf build of ea-utils 1.1.2+dfsg-1build1 in ubuntu xenial PROPOSED
  • Published
  • Copied from ubuntu wily-proposed armhf in Primary Archive for Ubuntu