gubbins binary package in Ubuntu Xenial amd64
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2016-01-28 06:39:58 UTC | Published | Ubuntu Xenial amd64 | release | universe | science | Optional | 1.4.5-1 | ||
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Deleted | Ubuntu Xenial amd64 | proposed | universe | science | Optional | 1.4.5-1 | |||
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2016-01-28 06:40:18 UTC | Superseded | Ubuntu Xenial amd64 | release | universe | science | Optional | 1.4.4-2 | ||
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2016-01-29 12:10:10 UTC | Deleted | Ubuntu Xenial amd64 | proposed | universe | science | Optional | 1.4.4-2 | ||
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2015-12-31 17:54:01 UTC | Superseded | Ubuntu Xenial amd64 | release | universe | science | Optional | 1.4.4-1 | ||
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2016-01-01 18:10:09 UTC | Deleted | Ubuntu Xenial amd64 | proposed | universe | science | Optional | 1.4.4-1 | ||
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2015-12-10 00:50:27 UTC | Superseded | Ubuntu Xenial amd64 | release | universe | science | Optional | 1.4.3-1 | ||
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2015-12-11 06:10:18 UTC | Deleted | Ubuntu Xenial amd64 | proposed | universe | science | Optional | 1.4.3-1 | ||
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