gbrowse 2.54+dfsg-2build1 (armhf binary) in ubuntu utopic
Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
Some of its features:
* Simultaneous bird's eye and detailed views of the genome;
* Scroll, zoom, center;
* Attach arbitrary URLs to any annotation;
* Order and appearance of tracks are customizable by administrator and
end-user;
* Search by annotation ID, name, or comment;
* Supports third party annotation using GFF formats;
* Settings persist across sessions;
* DNA and GFF dumps;
* Connectivity to different databases, including BioSQL and Chado;
* Multi-language support;
* Third-party feature loading;
* Customizable plug-in architecture (e.g. run BLAST, dump & import many
formats, find oligonucleotides, design primers, create restriction maps,
edit features).
Details
- Package version:
- 2.54+dfsg-2build1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
- gbrowse_2.54+dfsg-2build1_all.deb (2.4 MiB)
Package relationships
- Depends on:
- apache2 (>= 2.4)
- bioperl (>= 1.6.901)
- libbio-graphics-perl (>= 2.31)
- libcgi-session-perl (>= 4.02)
- libdbd-sqlite3-perl
- libgd-gd2-noxpm-perl (>= 2.07)
- libhttp-daemon-perl
- libio-string-perl
- libjs-prototype (>= 1.7)
- libjs-scriptaculous (>= 1.9)
- libjson-perl
- libstatistics-descriptive-perl
- libterm-readkey-perl
- libvm-ec2-perl
- libwww-perl
- perl
- perl (>= 5.10.0)
- sqlite3
- Suggests:
- Recommends: