chimeraslayer binary package in Ubuntu Trusty armhf

 ChimeraSlayer is a chimeric sequence detection utility, compatible with
 near-full length Sanger sequences and shorter 454-FLX sequences (~500bp).
 .
 Chimera Slayer involves the following series of steps that operate to
 flag chimeric 16S rRNA sequences:
 .
  1. the ends of a query sequence are searched against an included
     database of reference chimera-free 16S sequences to identify potential
     parents of a chimera
  2. candidate parents of a chimera are selected as those that form a
     branched best scoring alignment to the NAST-formatted query sequence
  3. the NAST alignment of the query sequence is improved in a
     ‘chimera-aware’ profile-based NAST realignment to the selected
     reference parent sequences
  4. an evolutionary framework is used to flag query sequences found to
     exhibit greater sequence homology to an in silico chimera formed
     between any two of the selected reference parent sequences.
 .
 To run Chimera Slayer, you need NAST-formatted sequences generated by
 the nast-ier utility.
 .
 ChimeraSlayer is part of the microbiomeutil suite.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2013-10-23 07:18:35 UTC Published Ubuntu Trusty armhf release universe science Optional 20101212+dfsg-1
  • Published
  • Copied from ubuntu trusty-proposed i386 in Primary Archive for Ubuntu
  Deleted Ubuntu Trusty armhf proposed universe science Optional 20101212+dfsg-1
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to release

  • Published
  • Copied from ubuntu trusty-proposed i386 in Primary Archive for Ubuntu