maffilter binary package in Ubuntu Oracular amd64
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
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* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2024-05-06 17:53:14 UTC | Published | Ubuntu Oracular amd64 | release | universe | science | Optional | 1.3.1+dfsg-6 | ||
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Deleted | Ubuntu Oracular amd64 | proposed | universe | science | Optional | 1.3.1+dfsg-6 | |||
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2024-05-06 17:55:15 UTC | Superseded | Ubuntu Oracular amd64 | release | universe | science | Optional | 1.3.1+dfsg-5build3 | ||
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