Binary package “python3-edlib” in ubuntu oracular
library for sequence alignment using edit distance (Python3 module)
A lightweight and super fast C/C++ library for sequence alignment using
edit distance.
.
Calculating edit distance of two strings is as simple as:
.
edlibAlign(
Features
.
* Calculates edit distance (Levehnstein distance).
* It can find optimal alignment path (instructions how to transform
first sequence into the second sequence).
* It can find just the start and/or end locations of alignment path -
can be useful when speed is more important than having exact
alignment path.
* Supports multiple alignment methods: global(NW), prefix(SHW) and
infix(HW), each of them useful for different scenarios.
* You can extend character equality definition, enabling you to e.g.
have wildcard characters, to have case insensitive alignment or to
work with degenerate nucleotides.
* It can easily handle small or very large sequences, even when finding
alignment path, while consuming very little memory.
* Super fast thanks to Myers's bit-vector algorithm.
.
This package contains the Python3 module.
Source package
Published versions
- python3-edlib 1.2.7-5build1 in amd64 (Release)
- python3-edlib 1.2.7-6 in amd64 (Proposed)
- python3-edlib 1.2.7-6 in amd64 (Release)
- python3-edlib 1.2.7-5build1 in arm64 (Release)
- python3-edlib 1.2.7-6 in arm64 (Proposed)
- python3-edlib 1.2.7-6 in arm64 (Release)
- python3-edlib 1.2.7-5build1 in armhf (Release)
- python3-edlib 1.2.7-6 in armhf (Proposed)
- python3-edlib 1.2.7-6 in armhf (Release)
- python3-edlib 1.2.7-5build1 in ppc64el (Release)
- python3-edlib 1.2.7-6 in ppc64el (Proposed)
- python3-edlib 1.2.7-6 in ppc64el (Release)
- python3-edlib 1.2.7-5build1 in riscv64 (Release)
- python3-edlib 1.2.7-6 in riscv64 (Proposed)
- python3-edlib 1.2.7-6 in riscv64 (Release)
- python3-edlib 1.2.7-5build1 in s390x (Release)
- python3-edlib 1.2.7-6 in s390x (Proposed)
- python3-edlib 1.2.7-6 in s390x (Release)