Binary package “dascrubber” in ubuntu oracular
alignment-based scrubbing pipeline for DNA sequencing reads
The Dazzler Scrubbing Suite produces a set of edited reads that are guaranteed
to
* be continuous stretches of the underlying genome (i.e. no unremoved
adapters and not chimers)
* have no very low quality stretches (i.e. the error rate never exceeds some
reasonable maximum, 20% or so in the case of Pacbio data).
Its secondary goal is to do so with the minimum removal of data and splitting
of reads.