Binary package “cmtk” in ubuntu oracular
Computational Morphometry Toolkit
A software toolkit for computational morphometry of biomedical
images, CMTK comprises a set of command line tools and a back-end
general-purpose library for processing and I/O.
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The command line tools primarily provide the following functionality:
registration (affine and nonrigid; single and multi-channel; pairwise
and groupwise), image correction (MR bias field estimation;
interleaved image artifact correction), processing (filters;
combination of segmentations via voting and STAPLE; shape-based
averaging), statistics (t-tests; general linear regression).