fastahack binary package in Ubuntu Noble s390x
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
|---|---|---|---|---|---|---|---|---|---|
| 2023-12-07 22:20:05 UTC | Published | Ubuntu Noble s390x | release | universe | science | Optional | 1.0.0+dfsg-11 | ||
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| Deleted | Ubuntu Noble s390x | proposed | universe | science | Optional | 1.0.0+dfsg-11 | |||
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| 2023-12-07 22:25:34 UTC | Superseded | Ubuntu Noble s390x | release | universe | science | Optional | 1.0.0+dfsg-10 | ||
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