transdecoder binary package in Ubuntu Noble riscv64

 TransDecoder identifies candidate coding regions within transcript sequences,
 such as those generated by de novo RNA-Seq transcript assembly using Trinity,
 or constructed based on RNA-Seq alignments to the genome using Tophat and
 Cufflinks.
 .
 TransDecoder identifies likely coding sequences based on the following
 criteria:
  * a minimum length open reading frame (ORF) is found in a transcript sequence
  * a log-likelihood score similar to what is computed by the GeneID software
    is > 0.
  * the above coding score is greatest when the ORF is scored in the 1st
    reading frame as compared to scores in the other 5 reading frames.
  * if a candidate ORF is found fully encapsulated by the coordinates of
    another candidate ORF, the longer one is reported. However, a single
    transcript can report multiple ORFs (allowing for operons, chimeras, etc).
  * optional the putative peptide has a match to a Pfam domain above the noise
    cutoff score.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2023-10-30 12:11:37 UTC Published Ubuntu Noble riscv64 release universe science Optional 5.7.1-2
  • Published
  • Copied from ubuntu noble-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Noble riscv64 proposed universe science Optional 5.7.1-2
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to noble

  • Published
  • Copied from ubuntu noble-proposed amd64 in Primary Archive for Ubuntu
  2023-10-30 12:14:37 UTC Superseded Ubuntu Noble riscv64 release universe science Optional 5.0.1-5
  • Removal requested .
  • Superseded by amd64 build of transdecoder 5.7.1-2 in ubuntu noble PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu